RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 OR2T1O43869 369 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 SLC43A1O75387 559 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 IGKV3-15P01624 115 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 BMP4P12644 408 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 SLC25A16P16260 332 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 AQP1P29972 269 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 CALCRP30988 508 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 UBE2NP61088 152 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 ARF1P84077 181 aaKnown RBP16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 NAAAQ02083 359 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 SQLEQ14534 574 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 C3orf36Q3SXR2 165 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 C6orf52Q5T4I8 152 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 H1FNTQ75WM6 255 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 HIPK1Q86Z02 1210 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 ADPRHL1Q8NDY3 354 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 SLC41A3Q96GZ6 507 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 SORCS2Q96PQ0 1159 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 GPR35Q9HC97 309 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 CORO2BQ9UQ03 480 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 PMF1-BGLAPU3KQ54 211 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 ANK2Q01484 3957 aa16.34■□□□□ 0.21
CCDC88B-206ENST00000473405 A0A087WUJ7 227 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 PRORSD1PA6NEY8 169 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 A8MV72 311 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 HPRP00739 348 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 F12P00748 615 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 CRYAAP02489 173 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 CELA3BP08861 270 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 CBLP22681 906 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 PAX7P23759 505 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 SLC6A2P23975 617 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 RGS8P57771 180 aaPredicted RBP16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 VLDLRP98155 873 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 ADIPOQQ15848 244 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 CXXC5Q7LFL8 322 aaKnown RBP16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 PTOV1Q86YD1 416 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 FAM169BQ8N8A8 192 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 HIPK4Q8NE63 616 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 SLC47A1Q96FL8 570 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF607Q96SK3 696 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF385DQ9H6B1 395 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 CRLF2Q9HC73 371 aa16.33■□□□□ 0.2
CCDC88B-206ENST00000473405 EVPLLA8MZ36 301 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 MS4A18H0YCH9 400 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 BGLAPP02818 100 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 CSF3P09919 207 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 HLA-DOBP13765 273 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 HOXB1P14653 301 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 SERPINF1P36955 418 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 PCBP3P57721 371 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 NCALDP61601 193 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 SNRPD2P62316 118 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 C1DQ13901 141 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 OR1Q1Q15612 314 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 CEACAM16Q2WEN9 425 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 MS4A18Q3C1V0 323 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 PHYHD1Q5SRE7 291 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 NET1Q7Z628 596 aaPredicted RBP16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 ARMC8Q8IUR7 673 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 WDFY1Q8IWB7 410 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 GPR137CQ8N3F9 429 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 OR6S1Q8NH40 331 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 DYDC1Q8WWB3 177 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 STON2Q8WXE9 905 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 MOGAT1Q96PD6 335 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 KCNS3Q9BQ31 491 aa16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 MOV10Q9HCE1 1003 aaKnown RBP16.32■□□□□ 0.2
CCDC88B-206ENST00000473405 VWC2LB2RUY7 222 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 SEC14L2O76054 403 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 PDE5AO76074 875 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 MFN2O95140 757 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 CDH12P55289 794 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 HGFACQ04756 655 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 SELPLGQ14242 412 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 RUNDC3AQ59EK9 446 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 SWT1Q5T5J6 900 aaKnown RBP16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 NHLRC1Q6VVB1 395 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 DHDDSQ86SQ9 333 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 RETREG3Q86VR2 466 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 SCAIQ8N9R8 606 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 PIK3C3Q8NEB9 887 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 BHLHE22Q8NFJ8 381 aaPredicted RBP16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 ANGPT4Q9Y264 503 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 CORINQ9Y5Q5 1042 aa16.31■□□□□ 0.2
CCDC88B-206ENST00000473405 ZNF99A8MXY4 864 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 LRRN3E7EW58 273 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 M0R3H8 397 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 SERPINB7O75635 380 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 OR4A8P0C604 315 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 NQO1P15559 274 aaKnown RBP16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 CBR1P16152 277 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 IL1RL1Q01638 556 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 POU3F1Q03052 451 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 MFSD13AQ14CX5 517 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 EFNB3Q15768 340 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 NPTX1Q15818 432 aa16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 RANBP3LQ86VV4 465 aaPredicted RBP16.3■□□□□ 0.2
CCDC88B-206ENST00000473405 UEVLDQ8IX04 471 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms