RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TAS2R1Q9NYW7 299 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 ZNF229Q9UJW7 825 aa16.45■□□□□ 0.22
SHH-204ENST00000441114 FAM32AQ9Y421 112 aaKnown RBP16.45■□□□□ 0.22
SHH-204ENST00000441114 FAM221AA4D161 298 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 BLOC1S5-TXNDC5H3BN57 136 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 UPK3AO75631 287 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 OR7A10O76100 309 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 HRGP04196 525 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 IFI30P13284 250 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 COX5AP20674 150 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 LSM11P83369 360 aaKnown RBP eCLIP16.44■□□□□ 0.22
SHH-204ENST00000441114 TAB1Q15750 504 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 CARD17Q5XLA6 110 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 NANOGNBQ7Z5D8 188 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 TSEN54Q7Z6J9 526 aaKnown RBP16.44■□□□□ 0.22
SHH-204ENST00000441114 MEX3DQ86XN8 651 aaKnown RBP16.44■□□□□ 0.22
SHH-204ENST00000441114 CDC20BQ86Y33 519 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 POMGNT2Q8NAT1 580 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 TXNDC15Q96J42 360 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 CLPTM1LQ96KA5 538 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 MAN2C1Q9NTJ4 1040 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 MED29Q9NX70 200 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 TAS2R16Q9NYV7 291 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 MALT1Q9UDY8 824 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 DCHS2Q6V1P9 2916 aa16.44■□□□□ 0.22
SHH-204ENST00000441114 ANKHD1Q8IWZ3 2542 aaKnown RBP16.43■□□□□ 0.22
SHH-204ENST00000441114 LOC102725191A0A1B0GVB3 256 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 A0A1W2PR80 420 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 DEFB108AA8MXU0 73 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 SIAH2O43255 324 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 RNF13O43567 381 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 TRAF3IP2O43734 574 aaPredicted RBP16.43■□□□□ 0.22
SHH-204ENST00000441114 AKAP8O43823 692 aaKnown RBP16.43■□□□□ 0.22
SHH-204ENST00000441114 SLC43A1O75387 559 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 ITGA5P08648 1049 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 ASAH2BP0C7U1 165 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 VLDLRP98155 873 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 TBPL2Q6SJ96 375 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 ZNF730Q6ZMV8 503 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 ARHGAP24Q8N264 748 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 HSD17B8Q92506 261 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 ALKBH3Q96Q83 286 aaPredicted RBP16.43■□□□□ 0.22
SHH-204ENST00000441114 THTPAQ9BU02 230 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 TAS2R5Q9NYW4 299 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 NDUFAF4Q9P032 175 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 PRPF19Q9UMS4 504 aaKnown RBP16.43■□□□□ 0.22
SHH-204ENST00000441114 NOX1Q9Y5S8 564 aa16.43■□□□□ 0.22
SHH-204ENST00000441114 FBN2P35556 2912 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 PRSS23O95084 383 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 ATP6V1B2P21281 511 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 RRM2BQ7LG56 351 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 ABHD12BQ7Z5M8 362 aaPredicted RBP16.42■□□□□ 0.22
SHH-204ENST00000441114 PXKQ7Z7A4 578 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 NRMQ8IXM6 262 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 GPR137CQ8N3F9 429 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 OR52N5Q8NH56 324 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 MCUR1Q96AQ8 359 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 BPIFA2Q96DR5 249 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 C7orf34Q96L11 122 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 OR2M2Q96R28 347 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 C1orf21Q9H246 121 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 LIME1Q9H400 295 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 NMNAT1Q9HAN9 279 aaPredicted RBP16.42■□□□□ 0.22
SHH-204ENST00000441114 ACTR3BQ9P1U1 418 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 RCE1Q9Y256 329 aa16.42■□□□□ 0.22
SHH-204ENST00000441114 PRR14LQ5THK1 2151 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 A0A087WUU8 490 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.41■□□□□ 0.22
SHH-204ENST00000441114 SLC35F4A4IF30 521 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 ZNF726A6NNF4 738 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 ZNF587BE7ETH6 402 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 PDLIM1O00151 329 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 GYG2O15488 501 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 KLF4O43474 513 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 ZNF432O94892 652 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 GOSR1O95249 250 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 H1F0P07305 194 aaKnown RBP16.41■□□□□ 0.22
SHH-204ENST00000441114 IFNGR1P15260 489 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 RHCEP18577 417 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 MPGP29372 298 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 BIDP55957 195 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 MS4A2Q01362 244 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 ZP4Q12836 540 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 CAMK2DQ13557 499 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 PPA1Q15181 289 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 GABRA6Q16445 453 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 FGD3Q5JSP0 725 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 HMBOX1Q6NT76 420 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 LINGO2Q7L985 606 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 DHFR2Q86XF0 187 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 PIK3C3Q8NEB9 887 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 ANKK1Q8NFD2 765 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 ACOT11Q8WXI4 607 aaPredicted RBP16.41■□□□□ 0.22
SHH-204ENST00000441114 CCDC124Q96CT7 223 aaKnown RBP16.41■□□□□ 0.22
SHH-204ENST00000441114 MUCL1Q96DR8 90 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 PLPPR2Q96GM1 343 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 HS3ST6Q96QI5 342 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 SEPHS2Q99611 448 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 LINC00470Q9BZP3 86 aa16.41■□□□□ 0.22
SHH-204ENST00000441114 ITPR2Q14571 2701 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms