RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 GPR45Q9Y5Y3 372 aa6.98□□□□□ -1.29
VIM-202ENST00000421459 DSPPQ9NZW4 1301 aa6.98□□□□□ -1.29
VIM-202ENST00000421459 IGKV1D-42A0A075B6H8 117 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 LRRN3E7EW58 273 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 MS4A18H0YCH9 400 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 RPL36A-HNRNPH2H7BZ11 118 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 RFXANKO14593 260 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 KCNAB3O43448 404 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 SLC43A1O75387 559 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 VAMP5O95183 116 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 AHSA1O95433 338 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 AVPP01185 164 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 PATE4P0C8F1 98 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 KITP10721 976 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 CD79AP11912 226 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 ZNF43P17038 809 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 EGR1P18146 543 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 NR4A1P22736 598 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 HTR2AP28223 471 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 GRPRP30550 384 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 DVL1P1P54792 670 aaPredicted RBP6.97□□□□□ -1.29
VIM-202ENST00000421459 DSTNP60981 165 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 BST1Q10588 318 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 HNRNPA0Q13151 305 aaKnown RBP6.97□□□□□ -1.29
VIM-202ENST00000421459 STX3Q13277 289 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 C1DQ13901 141 aaKnown RBP6.97□□□□□ -1.29
VIM-202ENST00000421459 MS4A18Q3C1V0 323 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 C3orf36Q3SXR2 165 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 WDR93Q6P2C0 686 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 C1orf229Q6ZS94 237 aaPredicted RBP6.97□□□□□ -1.29
VIM-202ENST00000421459 ZNF440Q8IYI8 595 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 TMEM123Q8N131 208 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 GPR137CQ8N3F9 429 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 TRIML2Q8N7C3 387 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 SEMA6DQ8NFY4 1073 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 MFSD8Q8NHS3 518 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 FGFBP3Q8TAT2 258 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 STK35Q8TDR2 534 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 HPS1Q92902 700 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 ZNF75AQ96N20 296 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 ANKRD27Q96NW4 1050 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 OXGR1Q96P68 337 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 PAIP2Q9BPZ3 127 aaKnown RBP6.97□□□□□ -1.29
VIM-202ENST00000421459 WFDC6Q9BQY6 131 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 SPATA9Q9BWV2 254 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 PIF1Q9H611 641 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 HIF1ANQ9NWT6 349 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 MED29Q9NX70 200 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 B3GNT2Q9NY97 397 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 PLCE1Q9P212 2302 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 P2RX2Q9UBL9 471 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 REV1Q9UBZ9 1251 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.97□□□□□ -1.29
VIM-202ENST00000421459 METRNQ9UJH8 293 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 RAB21Q9UL25 225 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.97□□□□□ -1.29
VIM-202ENST00000421459 CMAHPQ9Y471 501 aa6.97□□□□□ -1.29
VIM-202ENST00000421459 V9GYY5 206 aaPredicted RBP6.97□□□□□ -1.29
VIM-202ENST00000421459 ARFGEF3Q5TH69 2177 aa6.96□□□□□ -1.29
VIM-202ENST00000421459 A0A1B0GWA3 101 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 DYNC1I1O14576 645 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 BIRC5O15392 142 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 SPRY1O43609 319 aaPredicted RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 TRAF3IP2O43734 574 aaPredicted RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 TPST1O60507 370 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 SERPINI2O75830 405 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 NCR1O76036 304 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 KRT75O95678 551 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 CLPTM1O96005 669 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 NAT2P11245 290 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 ZNF35P13682 527 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 HOXB1P14653 301 aaPredicted RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 ARR3P36575 388 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 RBMXP38159 391 aaKnown RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 CRISP3P54108 245 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 LARS2Q15031 903 aaKnown RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 DPY19L1Q2PZI1 675 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 KRT71Q3SY84 523 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 GLIPR1L2Q4G1C9 344 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 SLC9B1Q4ZJI4 515 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 ZNF311Q5JNZ3 666 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 C1QTNF12Q5T7M4 302 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 RNF220Q5VTB9 566 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 NXNQ6DKJ4 435 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 OGFOD2Q6N063 350 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 FAHD2BQ6P2I3 314 aaPredicted RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 C10orf111Q8N326 155 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 FAM169BQ8N8A8 192 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 OR9I1Q8NGQ6 314 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 AENQ8WTP8 325 aaKnown RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 MRPL24Q96A35 216 aaKnown RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 FAHD2AQ96GK7 314 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 LRRC37BQ96QE4 947 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 TPT1P8Q9HAU6 139 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 KCNK9Q9NPC2 374 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 ZNF275Q9NSD4 429 aaPredicted RBP6.96□□□□□ -1.3
VIM-202ENST00000421459 ZNF224Q9NZL3 707 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 HAO1Q9UJM8 370 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 ZNF232Q9UNY5 417 aa6.96□□□□□ -1.3
VIM-202ENST00000421459 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.96□□□□□ -1.33e-7■■■■□ 24.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms