RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LINC00470Q9BZP3 86 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 BPESC1Q9GZL8 116 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 IKZF5Q9H5V7 419 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 PIF1Q9H611 641 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 ARMC7Q9H6L4 198 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 NOX3Q9HBY0 568 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 CRLF2Q9HC73 371 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 BCL2L10Q9HD36 194 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 OBP2BQ9NPH6 170 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 CRNNQ9UBG3 495 aaPredicted RBP10.03□□□□□ -0.8
USP4-204ENST00000416417 STAB1Q9NY15 2570 aa10.03□□□□□ -0.8
USP4-204ENST00000416417 A0A096LPI6 279 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 MS4A18H0YCH9 400 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 hCG_2039718K7EN88 272 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 IL2RGP31785 369 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 GZMKP49863 264 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 MS4A18Q3C1V0 323 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 FAM120AOSQ5T036 256 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 GCNT6Q5T4J0 391 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 FAM166AQ6J272 317 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 KRT80Q6KB66 452 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 EPGNQ6UW88 154 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 SPATA21Q7Z572 469 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 CDK20Q8IZL9 346 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 TLCD1Q96CP7 247 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 MS4A3Q96HJ5 214 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 TXNDC15Q96J42 360 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 TPK1Q9H3S4 243 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 PLK3Q9H4B4 646 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 TMBIM4Q9HC24 238 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 SLCO1B3Q9NPD5 702 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 KLHL14Q9P2G3 628 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 KCNS2Q9ULS6 477 aa10.02□□□□□ -0.8
USP4-204ENST00000416417 SVEP1Q4LDE5 3571 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 TRAV36DV7A0A075B6V5 113 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 IGHV2OR16-5A0A0B4J2B6 119 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 TMEM129A0AVI4 362 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 OR6C65A6NJZ3 312 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 B9A039 149 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 AIM2O14862 343 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 TRAF3IP2O43734 574 aaPredicted RBP10.02□□□□□ -0.81
USP4-204ENST00000416417 TPST2O60704 377 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 SERPINI2O75830 405 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 TGFAP01135 160 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 HLA-HP01893 362 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 IGFBP1P08833 259 aaPredicted RBP10.02□□□□□ -0.81
USP4-204ENST00000416417 ARAFP10398 606 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 BMP2P12643 396 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 CBR1P16152 277 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 IDH3AP50213 366 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 PIGFQ07326 219 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 MSMPQ1L6U9 139 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 ALG10BQ5I7T1 473 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 H1FNTQ75WM6 255 aaPredicted RBP10.02□□□□□ -0.81
USP4-204ENST00000416417 CROCCP2Q86T23 111 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 TMEM123Q8N131 208 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 GOLGA6L1Q8N7Z2 621 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 MAGEE2Q8TD90 523 aaPredicted RBP10.02□□□□□ -0.81
USP4-204ENST00000416417 SLC38A4Q969I6 547 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 MOGAT1Q96PD6 335 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 TMEM160Q9NX00 188 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 MED29Q9NX70 200 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 THUMPD1Q9NXG2 353 aaKnown RBP10.02□□□□□ -0.81
USP4-204ENST00000416417 CCDC167Q9P0B6 97 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 VAPAQ9P0L0 249 aa10.02□□□□□ -0.81
USP4-204ENST00000416417 ARFGEF3Q5TH69 2177 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 LOC390937A0A1W2PQ73 354 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 RPL36A-HNRNPH2H7BZ11 118 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 STAMBPO95630 424 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 IGKV3-15P01624 115 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 BGLAPP02818 100 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 CD79AP11912 226 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 DAOP14920 347 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 NQO1P15559 274 aaKnown RBP10.01□□□□□ -0.81
USP4-204ENST00000416417 SRD5A1P18405 259 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 NPR2P20594 1047 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 PRKAR1BP31321 381 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 STX1BP61266 288 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 CDK6Q00534 326 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 FADDQ13158 208 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 CAMK2DQ13557 499 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 EFNB3Q15768 340 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 ZSWIM7Q19AV6 140 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 FAM69AQ5T7M9 428 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 C6orf89Q6UWU4 347 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 C10orf53Q8N6V4 93 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 OR4F15Q8NGB8 312 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 SPDL1Q96EA4 605 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 THOC1Q96FV9 657 aaKnown RBP10.01□□□□□ -0.81
USP4-204ENST00000416417 DOK1Q99704 481 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 RAD21L1Q9H4I0 556 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 SLC52A3Q9NQ40 469 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 TCF7L2Q9NQB0 619 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 FZR1Q9UM11 496 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 RCE1Q9Y256 329 aa10.01□□□□□ -0.81
USP4-204ENST00000416417 A0A087WUJ7 227 aa10□□□□□ -0.81
USP4-204ENST00000416417 M0R3H8 397 aa10□□□□□ -0.81
USP4-204ENST00000416417 NDUFS8O00217 210 aa10□□□□□ -0.81
USP4-204ENST00000416417 POLR3GO15318 223 aaPredicted RBP10□□□□□ -0.81
USP4-204ENST00000416417 ZNF500O60304 480 aaPredicted RBP10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms