RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 POLR3FQ9H1D9 316 aaPredicted RBP2.19□□□□□ -2.06
MCF2-204ENST00000414978 FNDC4Q9H6D8 234 aaPredicted RBP2.19□□□□□ -2.06
MCF2-204ENST00000414978 IL1RAPQ9NPH3 570 aa2.19□□□□□ -2.06
MCF2-204ENST00000414978 DCAF13Q9NV06 445 aaKnown RBP2.19□□□□□ -2.06
MCF2-204ENST00000414978 SMARCAL1Q9NZC9 954 aa2.19□□□□□ -2.06
MCF2-204ENST00000414978 LRP4O75096 1905 aa2.19□□□□□ -2.06
MCF2-204ENST00000414978 HELZ2Q9BYK8 2649 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 UQCRHLA0A096LP55 91 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 LOC105371267A0A1B0GV96 52 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 SMCO3A2RU48 225 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 FRG2CA6NGY1 282 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 OR6C65A6NJZ3 312 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 GPR171O14626 319 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 P2RX6O15547 441 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ENSAO43768 121 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 KRT14P02533 472 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 IGF1P05019 195 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 UQCRHP07919 91 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ZNF3P17036 446 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 CNR1P21554 472 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 MARK3P27448 753 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 DPP4P27487 766 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 DUSP3P51452 185 aaPredicted RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 SGSHP51688 502 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 EMP2P54851 167 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 LIM2P55344 173 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ACTBP60709 375 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 GNG11P61952 73 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 SNRPFP62306 86 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 ACTA2P62736 377 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ACTG1P63261 375 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ACTG2P63267 376 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ACTC1P68032 377 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ACTA1P68133 377 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 DPYSL3Q14195 570 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 EMC2Q15006 297 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 SPA17Q15506 151 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 EXOC3L4Q17RC7 722 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ACER2Q5QJU3 275 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 WLSQ5T9L3 541 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 GOLGA7Q7Z5G4 137 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 CCDC36Q8IYA8 594 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 DAW1Q8N136 415 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 TCAIMQ8N3R3 496 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 OR2T11Q8NH01 316 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 OR2T6Q8NHC8 308 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 TMEM163Q8TC26 289 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP2.18□□□□□ -2.06
MCF2-204ENST00000414978 CCDC42Q96M95 316 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 FAM218AQ96MZ4 157 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 SLC25A51Q9H1U9 297 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 GPN2Q9H9Y4 310 aaPredicted RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 LZTFL1Q9NQ48 299 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 TMEM30AQ9NV96 361 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 CHD8Q9HCK8 2581 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 IGLV5-37A0A075B6J1 123 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 C1QTNF3-AMACRE9PGA6 284 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 EI24O14681 340 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 STK17BO94768 372 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 SLC35G4P0C7Q5 338 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 UBTFL6P0CB48 400 aaPredicted RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 HSD17B1P14061 328 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 SELEP16581 610 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 GTF2E2P29084 291 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 OXTRP30559 389 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 EVI2BP34910 448 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 SNRPD1P62314 119 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 RPS15P62841 145 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 ERVK-8P63133 956 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 GTF2BQ00403 316 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 POM121L1PQ3SYA9 428 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 EOGTQ5NDL2 527 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 DDI2Q5TDH0 399 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 TWF2Q6IBS0 349 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 RBMS3Q6XE24 437 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 LEKR1Q6ZMV7 388 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 NR2C2APQ86WQ0 139 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ZNF564Q8TBZ8 553 aaPredicted RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 RDH11Q8TC12 318 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 LRRC45Q96CN5 670 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 C10orf35Q96D05 121 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ECHDC3Q96DC8 303 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 MOCOSQ96EN8 888 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 C17orf77Q96MU5 243 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 CHP1Q99653 195 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 NHEJ1Q9H9Q4 299 aaPredicted RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 ADAM22Q9P0K1 906 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ZKSCAN7Q9P0L1 754 aaPredicted RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 SLC22A14Q9Y267 594 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 TPRP12270 2363 aaKnown RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 TEX48A0A1B0GUV7 120 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 hCG_38984A0A1B0GV85 526 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 FAM240BA0A1B0GVZ2 78 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 PRR32B1ATL7 298 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 TSPAN12O95859 305 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 ECDO95905 644 aaPredicted RBP2.18□□□□□ -2.06
MCF2-204ENST00000414978 TACSTD2P09758 323 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 CCDC172P0C7W6 258 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 GLRA1P23415 457 aa2.18□□□□□ -2.06
MCF2-204ENST00000414978 DCTP40126 519 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms