RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 MS4A18Q3C1V0 323 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 KLHL17Q6TDP4 642 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 NKAIN4Q8IVV8 208 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 RNF113BQ8IZP6 322 aaKnown RBP12.97□□□□□ -0.33
CHD1-202ENST00000414220 OFCC1Q8IZS5 231 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 NINJ1Q92982 152 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 ADAD1Q96M93 576 aaKnown RBP12.97□□□□□ -0.33
CHD1-202ENST00000414220 MUS81Q96NY9 551 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 MOGAT1Q96PD6 335 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 PRSS27Q9BQR3 290 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 KRCC1Q9NPI7 259 aaPredicted RBP12.97□□□□□ -0.33
CHD1-202ENST00000414220 A4GNTQ9UNA3 340 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 AMDHD2Q9Y303 409 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 ENPP4Q9Y6X5 453 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 CRYBG3Q68DQ2 2970 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 CELSR2Q9HCU4 2923 aa12.97□□□□□ -0.33
CHD1-202ENST00000414220 ANKHD1Q8IWZ3 2542 aaKnown RBP12.97□□□□□ -0.33
CHD1-202ENST00000414220 NOTCH2Q04721 2471 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.96□□□□□ -0.33
CHD1-202ENST00000414220 WNT11O96014 354 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 THBDP07204 575 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 EDNRAP25101 427 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 NTF4P34130 210 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 YAP1P46937 504 aaKnown RBP12.96□□□□□ -0.33
CHD1-202ENST00000414220 SH3BGRP55822 239 aaPredicted RBP12.96□□□□□ -0.33
CHD1-202ENST00000414220 SMIM11AP58511 58 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 PRPS1P60891 318 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 ZP4Q12836 540 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 KEAP1Q14145 624 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 WDR88Q6ZMY6 472 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 TRPM8Q7Z2W7 1104 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 HDDC2Q7Z4H3 204 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 FAM156AQ8NDB6 213 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 TMEM255BQ8WV15 326 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 PLPPR2Q96GM1 343 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 PYURFQ96I23 114 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 NDEL1Q9GZM8 345 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 C1orf21Q9H246 121 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 MUC13Q9H3R2 512 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 ANKRD19PQ9H560 264 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 MOV10Q9HCE1 1003 aaKnown RBP12.96□□□□□ -0.33
CHD1-202ENST00000414220 B3GAT1Q9P2W7 334 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 STX18Q9P2W9 335 aaKnown RBP12.96□□□□□ -0.33
CHD1-202ENST00000414220 SEC14L4Q9UDX3 406 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 CD300AQ9UGN4 299 aa12.96□□□□□ -0.33
CHD1-202ENST00000414220 PRPF19Q9UMS4 504 aaKnown RBP12.96□□□□□ -0.33
CHD1-202ENST00000414220 A0A1W2PRG6 482 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 DEFB108AA8MXU0 73 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 LRRN3E7EW58 273 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 C11orf98E9PRG8 122 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 BLOC1S5-TXNDC5H3BN57 136 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 KLF4O43474 513 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 SERPINI2O75830 405 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 OR7A10O76100 309 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 CD3EP07766 207 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 RHCEP18577 417 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 CDH2P19022 906 aaPredicted RBP12.95□□□□□ -0.34
CHD1-202ENST00000414220 UBE2NP61088 152 aaKnown RBP12.95□□□□□ -0.34
CHD1-202ENST00000414220 GABRA6Q16445 453 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 FXNQ16595 210 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 ANKDD1AQ495B1 522 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 MTX3Q5HYI7 312 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 C9orf135Q5VTT2 229 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 TMEM108Q6UXF1 575 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 ZNF730Q6ZMV8 503 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 DEPDC4Q8N2C3 294 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 RBM15BQ8NDT2 890 aaKnown RBP12.95□□□□□ -0.34
CHD1-202ENST00000414220 OR6N1Q8NGY5 312 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 ACOT11Q8WXI4 607 aaPredicted RBP12.95□□□□□ -0.34
CHD1-202ENST00000414220 LRR1Q96L50 414 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 OBP2BQ9NPH6 170 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 MEPEQ9NQ76 525 aaPredicted RBP12.95□□□□□ -0.34
CHD1-202ENST00000414220 ST6GALNAC2Q9UJ37 374 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 ITGB1BP2Q9UKP3 347 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 MPDZO75970 2070 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 CENPEQ02224 2701 aa12.95□□□□□ -0.34
CHD1-202ENST00000414220 SLC35F4A4IF30 521 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 PDLIM1O00151 329 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 TRAF3IP2O43734 574 aaPredicted RBP12.94□□□□□ -0.34
CHD1-202ENST00000414220 ENTPD5O75356 428 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 BCL10O95999 233 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 RAF1P04049 648 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 H1F0P07305 194 aaKnown RBP12.94□□□□□ -0.34
CHD1-202ENST00000414220 ITGA5P08648 1049 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 ASAH2BP0C7U1 165 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 SAGP10523 405 aaPredicted RBP12.94□□□□□ -0.34
CHD1-202ENST00000414220 IFI30P13284 250 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 HOXB1P14653 301 aaPredicted RBP12.94□□□□□ -0.34
CHD1-202ENST00000414220 UGT2B15P54855 530 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 ROR2Q01974 943 aaKnown RBP12.94□□□□□ -0.34
CHD1-202ENST00000414220 SLC35D2Q76EJ3 337 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 TSPYL5Q86VY4 417 aaPredicted RBP12.94□□□□□ -0.34
CHD1-202ENST00000414220 OR52N5Q8NH56 324 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 LIPHQ8WWY8 451 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 BPIFA2Q96DR5 249 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 RADILQ96JH8 1075 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 ALKBH3Q96Q83 286 aaPredicted RBP12.94□□□□□ -0.34
CHD1-202ENST00000414220 RHCGQ9UBD6 479 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 MGAT4BQ9UQ53 548 aa12.94□□□□□ -0.34
CHD1-202ENST00000414220 TMEM5Q9Y2B1 443 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms