RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 NOXRED1Q6NXP6 359 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SCIMPQ6UWF3 145 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 ASRGL1Q7L266 308 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 C9orf40Q8IXQ3 194 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 LIX1Q8N485 282 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 CPSF7Q8N684 471 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 GIMAP1Q8WWP7 306 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 TMCO6Q96DC7 493 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 FAM210AQ96ND0 272 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SECISBP2Q96T21 854 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 EBPLQ9BY08 206 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 LRMDAQ9H2I8 198 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 LIN28AQ9H9Z2 209 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 MYNNQ9NPC7 610 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 ATAD3AQ9NVI7 634 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 ZNF223Q9UK11 482 aaPredicted RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 EIF3LQ9Y262 564 aaKnown RBP5.68□□□□□ -1.5
USP40-202ENST00000409945 OR10H1Q9Y4A9 318 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 LRRK2Q5S007 2527 aa5.68□□□□□ -1.5
USP40-202ENST00000409945 SVILO95425 2214 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 A0A0G2JND7 137 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 CCL21O00585 134 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 LYPLA1O75608 230 aaPredicted RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 SERPINE1P05121 402 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 IL12BP29460 328 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 HTR6P50406 440 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 TDGF1P3P51864 188 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 NCBP2P52298 156 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP40-202ENST00000409945 SH3BGRP55822 239 aaPredicted RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 LINC00205P59089 165 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 RPL38P63173 70 aaKnown RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 ELF3P78545 371 aaPredicted RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 PLCXD2Q0VAA5 305 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 VPS26BQ4G0F5 336 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 FAM91A1Q658Y4 838 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 TMEM211Q6ICI0 200 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 FJX1Q86VR8 437 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 FBXW8Q8N3Y1 598 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 ZFP62Q8NB50 900 aaPredicted RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 OR2M7Q8NG81 312 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 ZNF675Q8TD23 568 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 TWIST2Q8WVJ9 160 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 PPCDCQ96CD2 204 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 MTERF3Q96E29 417 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 ZBED6CLQ96FA7 236 aaPredicted RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 ZNF597Q96LX8 424 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 DOHHQ9BU89 302 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 HES7Q9BYE0 225 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 METTL7AQ9H8H3 244 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 IL1RL2Q9HB29 575 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP40-202ENST00000409945 DDX18Q9NVP1 670 aaKnown RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 COQ3Q9NZJ6 369 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 CES1P1Q9UKY3 287 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 BLOC1S6Q9UL45 172 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 POLR3HQ9Y535 204 aaPredicted RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 SHANK1Q9Y566 2161 aa5.67□□□□□ -1.5
USP40-202ENST00000409945 FLNBO75369 2602 aaKnown RBP5.67□□□□□ -1.5
USP40-202ENST00000409945 UBFD1O14562 309 aaKnown RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 PRKNO60260 465 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 SNNO75324 88 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 WISP2O76076 250 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 BCL10O95999 233 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 TPOP07202 933 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 LINC00032P0C843 101 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 PRPS2P11908 318 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 GP1BBP13224 206 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 TMEM11P17152 192 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 PAX7P23759 505 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CA7P43166 264 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 PPICP45877 212 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 FOXA1P55317 472 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 KCNK10P57789 538 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 BST1Q10588 318 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 ZNF155Q12901 538 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 STX3Q13277 289 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 SLC10A1Q14973 349 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CHI3L2Q15782 390 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 NTRK2Q16620 822 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 NUP54Q7Z3B4 507 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 SLC34A3Q8N130 599 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 ZNF321PQ8N8H1 164 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 FNDC5Q8NAU1 212 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 OR52R1Q8NGF1 315 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 AGR3Q8TD06 166 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 PAQR8Q8TEZ7 354 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 OTULINQ96BN8 352 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 TUBGCP3Q96CW5 907 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 THOC1Q96FV9 657 aaKnown RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 JSRP1Q96MG2 331 aaPredicted RBP5.66□□□□□ -1.5
USP40-202ENST00000409945 CDRT15Q96T59 188 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 DDOQ99489 341 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 QPCTLQ9NXS2 382 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 TAS2R7Q9NYW3 318 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 MAT2BQ9NZL9 334 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 KLRF1Q9NZS2 232 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 SH3BGRL2Q9UJC5 107 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 CLEC18AA5D8T8 446 aa5.66□□□□□ -1.5
USP40-202ENST00000409945 FRG2CA6NGY1 282 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms