RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 ERVK-25P63136 954 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 POU3F1Q03052 451 aaPredicted RBP16.14■□□□□ 0.17
SDC1-203ENST00000403076 TOP3AQ13472 1001 aaPredicted RBP16.14■□□□□ 0.17
SDC1-203ENST00000403076 TTC23Q5W5X9 447 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 PLXDC2Q6UX71 529 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 DPY19L2P2Q6ZN68 376 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 FAM57AQ8TBR7 257 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 ERMAPQ96PL5 475 aaPredicted RBP16.14■□□□□ 0.17
SDC1-203ENST00000403076 KATNB1Q9BVA0 655 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 GRIP2Q9C0E4 1043 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 ZNF175Q9Y473 711 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 GMPPBQ9Y5P6 360 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 NOX1Q9Y5S8 564 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 IER3IP1Q9Y5U9 82 aa16.14■□□□□ 0.17
SDC1-203ENST00000403076 LOC100130705A0A1B0GUX0 176 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 WDR1O75083 606 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 GABRA1P14867 456 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 RPS6KA3P51812 740 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 MYBPC1Q00872 1141 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 RASGEF1BQ0VAM2 473 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 C6orf52Q5T4I8 152 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 PXKQ7Z7A4 578 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 LRRC75AQ8NAA5 344 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 BAIAP2Q9UQB8 552 aa16.13■□□□□ 0.17
SDC1-203ENST00000403076 GTF3C1Q12789 2109 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 A0A1W2PNV4 684 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 ZAR1LA6NP61 321 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 CYTIPO60759 359 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 BCL10O95999 233 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 FCGR2AP12318 317 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 HLA-DOBP13765 273 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 CAPGP40121 348 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 CDK5Q00535 292 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 PGGHGQ32M88 737 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 SLC35F1Q5T1Q4 408 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 GTF2IRD2BQ6EKJ0 949 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 ACSM5Q6NUN0 579 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 CASP12Q6UXS9 341 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 SLC35D2Q76EJ3 337 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 GTF2IRD2Q86UP8 949 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 OR9K2Q8NGE7 335 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 OR4Q3Q8NH05 313 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 GPX7Q96SL4 187 aaPredicted RBP16.12■□□□□ 0.17
SDC1-203ENST00000403076 SF3B5Q9BWJ5 86 aaKnown RBP16.12■□□□□ 0.17
SDC1-203ENST00000403076 SLC25A19Q9HC21 320 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 NRIP3Q9NQ35 241 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 TVP23BQ9NYZ1 205 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 GRHPRQ9UBQ7 328 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 ZNF346Q9UL40 294 aaKnown RBP16.12■□□□□ 0.17
SDC1-203ENST00000403076 ADAM18Q9Y3Q7 739 aa16.12■□□□□ 0.17
SDC1-203ENST00000403076 LOC102725191A0A1B0GVB3 256 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 H0YAE9 185 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 BHLHE40O14503 412 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 SLC16A6O15403 523 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 SLC19A2O60779 497 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 AQP8O94778 261 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 HMGN1P05114 100 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 IFNGR1P15260 489 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 PTGER4P35408 488 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 CDC42P60953 191 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 ADARB1P78563 741 aaKnown RBP16.11■□□□□ 0.17
SDC1-203ENST00000403076 SLC17A1Q14916 467 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 ACKR1Q16570 336 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 ACSF3Q4G176 576 aaPredicted RBP16.11■□□□□ 0.17
SDC1-203ENST00000403076 EMC4Q5J8M3 183 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 EEF1A1P5Q5VTE0 462 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 SLX4IPQ5VYV7 408 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 ABLIM2Q6H8Q1 611 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 LNX2Q8N448 690 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 RNF128Q8TEB7 428 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 ABHD3Q8WU67 409 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 ZNF775Q96BV0 537 aaPredicted RBP16.11■□□□□ 0.17
SDC1-203ENST00000403076 PLEKHA8Q96JA3 519 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 HRASLS5Q96KN8 279 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 SLC38A2Q96QD8 506 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 PRRG3Q9BZD7 231 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 TXNIPQ9H3M7 391 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 FANCFQ9NPI8 374 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 KLHL9Q9P2J3 617 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 B3GAT1Q9P2W7 334 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 CLCF1Q9UBD9 225 aa16.11■□□□□ 0.17
SDC1-203ENST00000403076 IDH3BO43837 385 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 TGM6O95932 706 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 HOXD4P09016 255 aaPredicted RBP16.1■□□□□ 0.17
SDC1-203ENST00000403076 ACVR2AP27037 513 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 GRK5P34947 590 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 GGT2P36268 569 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 DAP3P51398 398 aaKnown RBP16.1■□□□□ 0.17
SDC1-203ENST00000403076 RPL27P61353 136 aaKnown RBP16.1■□□□□ 0.17
SDC1-203ENST00000403076 RNPS1Q15287 305 aaKnown RBP16.1■□□□□ 0.17
SDC1-203ENST00000403076 SNAPC1Q16533 368 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 C1orf185Q5T7R7 199 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 GPR139Q6DWJ6 353 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 RPTNQ6XPR3 784 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 ADGRE4PQ86SQ3 457 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 ST6GALNAC3Q8NDV1 305 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 FAM81AQ8TBF8 368 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 TFAP2CQ92754 450 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 Q96M85 177 aa16.1■□□□□ 0.17
SDC1-203ENST00000403076 TP63Q9H3D4 680 aaPredicted RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms