RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 MRPS28Q9Y2Q9 187 aaKnown RBP13.76□□□□□ -0.21
CHD4-201ENST00000357008 SLC10A3P09131 477 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 MAOBP27338 520 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 TACR3P29371 465 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 CPNE4Q96A23 557 aaPredicted RBP13.76□□□□□ -0.21
CHD4-201ENST00000357008 CCDC163A0A0D9SF12 145 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 ZBTB42B2RXF5 422 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 CEBPBP17676 345 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 KITLGP21583 273 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 KIAA1024LP59773 190 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 TMEM41BQ5BJD5 291 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 SFRP5Q5T4F7 317 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 CD300LGQ6UXG3 332 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 TAS1R1Q7RTX1 841 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 MDGA2Q7Z553 956 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 SLC22A24Q8N4F4 322 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 TMEM255BQ8WV15 326 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 KDM3BQ7LBC6 1761 aa13.76□□□□□ -0.21
CHD4-201ENST00000357008 FOLR3P41439 243 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 Q6ZTK2 550 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 BADQ92934 168 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 DUS3LQ96G46 650 aaKnown RBP13.75□□□□□ -0.21
CHD4-201ENST00000357008 A0A1B0GWA3 101 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 AGAP14A8MT82 685 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 FCGR2AP12318 317 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 NAGAP17050 411 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 IL2RGP31785 369 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 MTCP1P56278 107 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 MRPS34P82930 218 aaKnown RBP13.75□□□□□ -0.21
CHD4-201ENST00000357008 SEMA3BQ13214 749 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 PLGLAQ15195 96 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 LPCAT3Q6P1A2 487 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 OR2A12Q8NGT7 310 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 SELENOIQ9C0D9 397 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 UBQLN3Q9H347 655 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 H7C1C5 153 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 EDIL3O43854 480 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 SUSD5O60279 629 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 ZFAND5O76080 213 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 OR7C1O76099 320 aaPredicted RBP13.75□□□□□ -0.21
CHD4-201ENST00000357008 SCGB1D1O95968 90 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 SRMP19623 302 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 GP2P55259 537 aaKnown RBP13.75□□□□□ -0.21
CHD4-201ENST00000357008 LCN6P62502 163 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 TMEM201Q5SNT2 666 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 RTL10Q7L3V2 364 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 PRICKLE2Q7Z3G6 844 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 LMNTD1Q8N9Z9 388 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 TGFBR3Q03167 851 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 SLC35D3Q5M8T2 416 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 ESPNLQ6ZVH7 1005 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 FAM3CQ92520 227 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 FAM3DQ96BQ1 224 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 SEC22CQ9BRL7 303 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.75□□□□□ -0.211e-7■■■■□ 26.7
CHD4-201ENST00000357008 SPATA6Q9NWH7 488 aaPredicted RBP13.75□□□□□ -0.21
CHD4-201ENST00000357008 LOC100289279A0A1B0GTE1 492 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 DDAH2O95865 285 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 DBPQ10586 325 aaPredicted RBP13.75□□□□□ -0.21
CHD4-201ENST00000357008 CST9LP1Q5W188 147 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 FAM71E1Q6IPT2 247 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 BRICD5Q6PL45 260 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 FAM111BQ6SJ93 734 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 TMUB2Q71RG4 321 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 OR6M1Q8NGM8 313 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 CPT1CQ8TCG5 803 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 OR52A5Q9H2C5 316 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 PRSS16Q9NQE7 514 aa13.75□□□□□ -0.21
CHD4-201ENST00000357008 NDRG4Q9ULP0 352 aaKnown RBP13.75□□□□□ -0.21
CHD4-201ENST00000357008 MMP11P24347 488 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 BLVRBP30043 206 aaPredicted RBP13.74□□□□□ -0.21
CHD4-201ENST00000357008 NCDNQ9UBB6 729 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 TIAM2Q8IVF5 1701 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 TMEM200CA6NKL6 621 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 GNB3P16520 340 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 OMGP23515 440 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 HBG1P69891 147 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 HBG2P69892 147 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 C17orf99Q6UX52 265 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 SHISA6Q6ZSJ9 500 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 VASH1Q7L8A9 365 aaPredicted RBP13.74□□□□□ -0.21
CHD4-201ENST00000357008 WDR5BQ86VZ2 330 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 ZNF566Q969W8 418 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 OPN1LWP04000 364 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 POU3F2P20265 443 aaPredicted RBP13.74□□□□□ -0.21
CHD4-201ENST00000357008 TEAD1P28347 426 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 DEFB133Q30KQ1 61 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 TANGO2Q6ICL3 276 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 NKAIN3Q8N8D7 197 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 GPR78Q96P69 363 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 MBOAT4Q96T53 435 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 PIGMQ9H3S5 423 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 MYH1P12882 1939 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 CDC14CA4D256 554 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 TPPPO94811 219 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 MAGEB1P43366 347 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 CATR1Q13166 79 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 ZNF266Q14584 549 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 OR5M10Q6IEU7 315 aa13.74□□□□□ -0.21
CHD4-201ENST00000357008 BPHLQ86WA6 291 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms