RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ATP5J2P56134 94 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 IL1RL1Q01638 556 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 C1DQ13901 141 aaKnown RBP16.08■□□□□ 0.16
CLN3-202ENST00000355477 SLC22A25Q6T423 547 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 NHLRC1Q6VVB1 395 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 POU5F2Q8N7G0 328 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 ADPRHL1Q8NDY3 354 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 OR1K1Q8NGR3 316 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 ADAMTS16Q8TE57 1224 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 RADILQ96JH8 1075 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 EPYCQ99645 322 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 LINC00470Q9BZP3 86 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 MGAT4BQ9UQ53 548 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 RCE1Q9Y256 329 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 CAPN7Q9Y6W3 813 aa16.08■□□□□ 0.16
CLN3-202ENST00000355477 OR6C65A6NJZ3 312 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 H7C1Q1 480 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 CHP2O43745 196 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 NQO1P15559 274 aaKnown RBP16.07■□□□□ 0.16
CLN3-202ENST00000355477 TNFRSF1BP20333 461 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 PRPS1P60891 318 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 ROR2Q01974 943 aaKnown RBP16.07■□□□□ 0.16
CLN3-202ENST00000355477 VEZF1Q14119 521 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 MFSD13AQ14CX5 517 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 TBRG1Q3YBR2 411 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 B3GLCTQ6Y288 498 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 WDFY1Q8IWB7 410 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 C10orf53Q8N6V4 93 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 SCAIQ8N9R8 606 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 PCYOX1LQ8NBM8 494 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 BCL2L2Q92843 193 aaPredicted RBP16.07■□□□□ 0.16
CLN3-202ENST00000355477 RCN3Q96D15 328 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 ZNF837Q96EG3 531 aaPredicted RBP16.07■□□□□ 0.16
CLN3-202ENST00000355477 OR2M2Q96R28 347 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 TRAF4Q9BUZ4 470 aaPredicted RBP16.07■□□□□ 0.16
CLN3-202ENST00000355477 PCDHAC1Q9H158 963 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 MRPL39Q9NYK5 338 aaKnown RBP16.07■□□□□ 0.16
CLN3-202ENST00000355477 SLC7A7Q9UM01 511 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 CORINQ9Y5Q5 1042 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 ARFGEF3Q5TH69 2177 aa16.07■□□□□ 0.16
CLN3-202ENST00000355477 A0A096LPE4 126 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 A0A1W2PPZ6 126 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 PLPP3O14495 311 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 SLC22A2O15244 555 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 SLC43A1O75387 559 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 PMS2P3Q13401 168 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 PHYHD1Q5SRE7 291 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 Q71RC1 249 aaPredicted RBP16.06■□□□□ 0.16
CLN3-202ENST00000355477 BIVMQ86UB2 503 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 DTX2Q86UW9 622 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 TMEM123Q8N131 208 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 TXNDC15Q96J42 360 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 EMC6Q9BV81 110 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 ASPNQ9BXN1 380 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 NELFAQ9H3P2 528 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 GPR35Q9HC97 309 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 GID8Q9NWU2 228 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 GMPR2Q9P2T1 348 aaKnown RBP16.06■□□□□ 0.16
CLN3-202ENST00000355477 SH3GLB1Q9Y371 365 aa16.06■□□□□ 0.16
CLN3-202ENST00000355477 TRAPPC13A5PLN9 417 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 RPL36A-HNRNPH2H7BZ11 118 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 SHOX2O60902 331 aaPredicted RBP16.05■□□□□ 0.16
CLN3-202ENST00000355477 NDUFS7O75251 213 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 WNT11O96014 354 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 TUBA1BP68363 451 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 TUBA4AP68366 448 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 ARF1P84077 181 aaKnown RBP16.05■□□□□ 0.16
CLN3-202ENST00000355477 C1QTNF12Q5T7M4 302 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 HMBOX1Q6NT76 420 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 ERICH5Q6P6B1 374 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 KLHL24Q6TFL4 600 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 TUBA1AQ71U36 451 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 CARM1Q86X55 608 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 UEVLDQ8IX04 471 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 RASSF5Q8WWW0 418 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 GTPBP3Q969Y2 492 aaKnown RBP16.05■□□□□ 0.16
CLN3-202ENST00000355477 COX4I2Q96KJ9 171 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 PRSS27Q9BQR3 290 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 BDH2Q9BUT1 245 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 MED29Q9NX70 200 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 POU2F3Q9UKI9 436 aa16.05■□□□□ 0.16
CLN3-202ENST00000355477 CR1P17927 2039 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 SMAD7O15105 426 aaKnown RBP16.04■□□□□ 0.16
CLN3-202ENST00000355477 ATP8B1O43520 1251 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 COX4I1P13073 169 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 TTKP33981 857 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 POU3F1Q03052 451 aaPredicted RBP16.04■□□□□ 0.16
CLN3-202ENST00000355477 PUDPQ08623 228 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 ZNF74Q16587 644 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 CARD17Q5XLA6 110 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 ANKRD16Q6P6B7 361 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 TTC33Q6PID6 262 aaPredicted RBP16.04■□□□□ 0.16
CLN3-202ENST00000355477 TREML1Q86YW5 311 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 GPR137CQ8N3F9 429 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 LRRC17Q8N6Y2 441 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 RP9Q8TA86 221 aaKnown RBP16.04■□□□□ 0.16
CLN3-202ENST00000355477 PROX1Q92786 737 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 TRMT61AQ96FX7 289 aaKnown RBP16.04■□□□□ 0.16
CLN3-202ENST00000355477 DHRS9Q9BPW9 319 aa16.04■□□□□ 0.16
CLN3-202ENST00000355477 ZNF426Q9BUY5 554 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms