RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PRPS1P60891 318 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 COX10Q12887 443 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 ALG10Q5BKT4 473 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 FAHD1Q6P587 224 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 CD300LDQ6UXZ3 194 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 CREB3L2Q70SY1 520 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 CCDC120Q96HB5 630 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 ZNF556Q9HAH1 456 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 Q9UFV3 132 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 ESPL1Q14674 2120 aa19.72■□□□□ 0.75
SDC3-202ENST00000339394 ZNF724A8MTY0 619 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 MGRN1O60291 552 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 SS18L1O75177 396 aaPredicted RBP19.71■□□□□ 0.75
SDC3-202ENST00000339394 SERPINI2O75830 405 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 F13BP05160 661 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 TMIGD3P0DMS9 266 aaPredicted RBP19.71■□□□□ 0.75
SDC3-202ENST00000339394 GSTM3P21266 225 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 POU3F1Q03052 451 aaPredicted RBP19.71■□□□□ 0.75
SDC3-202ENST00000339394 FAM214BQ7L5A3 538 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 UEVLDQ8IX04 471 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 ZIC4Q8N9L1 334 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 ANKK1Q8NFD2 765 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 ZNF385AQ96PM9 386 aaKnown RBP19.71■□□□□ 0.75
SDC3-202ENST00000339394 ENKD1Q9H0I2 346 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 GABARAPL1Q9H0R8 117 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 SMURF2Q9HAU4 748 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 EMC3Q9P0I2 261 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 KIF17Q9P2E2 1029 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 NKX1-2Q9UD57 310 aaPredicted RBP19.71■□□□□ 0.75
SDC3-202ENST00000339394 IL20RAQ9UHF4 553 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 FLVCR1Q9Y5Y0 555 aa19.71■□□□□ 0.75
SDC3-202ENST00000339394 HSPB2A8KAH6 182 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 GPR171O14626 319 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 AGTR1P30556 359 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 NTF4P34130 210 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 KIR2DL2P43627 348 aaPredicted RBP19.7■□□□□ 0.74
SDC3-202ENST00000339394 C1DQ13901 141 aaKnown RBP19.7■□□□□ 0.74
SDC3-202ENST00000339394 HSPB2Q16082 182 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 TMEM201Q5SNT2 666 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 SMARCD3Q6STE5 483 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 KLHL17Q6TDP4 642 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 NHLRC1Q6VVB1 395 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 THSD4Q6ZMP0 1018 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 ZNF620Q6ZNG0 422 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 RASSF6Q6ZTQ3 369 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 CNEP1R1Q8N9A8 125 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 UCK2Q9BZX2 261 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 OR52D1Q9H346 318 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 NOX1Q9Y5S8 564 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 TRAF3IP2O43734 574 aaPredicted RBP19.7■□□□□ 0.74
SDC3-202ENST00000339394 TNFSF13O75888 250 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 NDUFB2O95178 105 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 CRHP06850 196 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 CTSSP25774 331 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 ADORA2A-AS1P86434 159 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 PPP2R2BQ00005 443 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 TAF11Q15544 211 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 RFX4Q33E94 735 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 EEF1A1P5Q5VTE0 462 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 IGFN1Q86VF2 1251 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 KIF18BQ86Y91 864 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 CCDC71Q8IV32 467 aaPredicted RBP19.7■□□□□ 0.74
SDC3-202ENST00000339394 LRRC75AQ8NAA5 344 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 FANK1Q8TC84 345 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 EGLN3Q9H6Z9 239 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 RNPEPL1Q9HAU8 725 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 INIPQ9NRY2 104 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 SLC5A6Q9Y289 635 aa19.7■□□□□ 0.74
SDC3-202ENST00000339394 SIRPAP78324 504 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 KDM4DQ6B0I6 523 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 MTFR2Q6P444 385 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 GALNT5Q7Z7M9 940 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 CBR4Q8N4T8 237 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 EME1Q96AY2 570 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 RBM4BQ9BQ04 359 aaKnown RBP19.69■□□□□ 0.74
SDC3-202ENST00000339394 TACO1Q9BSH4 297 aaKnown RBP19.69■□□□□ 0.74
SDC3-202ENST00000339394 C9orf16Q9BUW7 83 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 RBM4Q9BWF3 364 aaKnown RBP19.69■□□□□ 0.74
SDC3-202ENST00000339394 OSBPL10Q9BXB5 764 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 IL20Q9NYY1 176 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 REV1Q9UBZ9 1251 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 ERRFI1Q9UJM3 462 aaPredicted RBP19.69■□□□□ 0.74
SDC3-202ENST00000339394 NOSIPQ9Y314 301 aaKnown RBP19.69■□□□□ 0.74
SDC3-202ENST00000339394 EMC9Q9Y3B6 208 aa19.69■□□□□ 0.74
SDC3-202ENST00000339394 MCIDASD6RGH6 385 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 SOX14O95416 240 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 TP53P04637 393 aaPredicted RBP19.68■□□□□ 0.74
SDC3-202ENST00000339394 IGFBP1P08833 259 aaPredicted RBP19.68■□□□□ 0.74
SDC3-202ENST00000339394 IFNGR1P15260 489 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 RPL4P36578 427 aaKnown RBP19.68■□□□□ 0.74
SDC3-202ENST00000339394 CTXN1P60606 82 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 RIPK1Q13546 671 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 TRIP10Q15642 601 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 VWA1Q6PCB0 445 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 NUFIP2Q7Z417 695 aaKnown RBP19.68■□□□□ 0.74
SDC3-202ENST00000339394 STARD4Q96DR4 205 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 TXNDC15Q96J42 360 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 SAMD8Q96LT4 415 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 SFXN3Q9BWM7 321 aa19.68■□□□□ 0.74
SDC3-202ENST00000339394 PLA2G12AQ9BZM1 189 aa19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms