RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 TPK1Q9H3S4 243 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 MOV10Q9HCE1 1003 aaKnown RBP16.78■□□□□ 0.28
CLN3-262ENST00000637699 RASD1Q9Y272 281 aa16.78■□□□□ 0.28
CLN3-262ENST00000637699 CDHR4A6H8M9 788 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 TMEM229AB2RXF0 380 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 RGS16O15492 202 aaPredicted RBP16.77■□□□□ 0.28
CLN3-262ENST00000637699 WIPF1O43516 503 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 VENTXO95231 258 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 IGFBP1P08833 259 aaPredicted RBP16.77■□□□□ 0.28
CLN3-262ENST00000637699 TFPTP0C1Z6 253 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 MYZAPP0CAP1 466 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 PRG2P13727 222 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 HOXB1P14653 301 aaPredicted RBP16.77■□□□□ 0.28
CLN3-262ENST00000637699 SH3BGRP55822 239 aaPredicted RBP16.77■□□□□ 0.28
CLN3-262ENST00000637699 CLDN17P56750 224 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 NPRL3Q12980 569 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 ZNF836Q6ZNA1 936 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 OR52P1PQ8NH57 321 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 CKAP2Q8WWK9 683 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 SLC25A36Q96CQ1 311 aa16.77■□□□□ 0.28
CLN3-262ENST00000637699 METTL17Q9H7H0 456 aaPredicted RBP16.77■□□□□ 0.28
CLN3-262ENST00000637699 IGHV2OR16-5A0A0B4J2B6 119 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 LBPP18428 481 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 NCF2P19878 526 aaPredicted RBP16.76■□□□□ 0.27
CLN3-262ENST00000637699 DVL1P1P54792 670 aaPredicted RBP16.76■□□□□ 0.27
CLN3-262ENST00000637699 ABCE1P61221 599 aaKnown RBP16.76■□□□□ 0.27
CLN3-262ENST00000637699 UFM1P61960 85 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 IL1RL1Q01638 556 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 MAPK11Q15759 364 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 CHI3L2Q15782 390 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 ATG16L1Q676U5 607 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 UGT2A3Q6UWM9 527 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 NUF2Q9BZD4 464 aa16.76■□□□□ 0.27
CLN3-262ENST00000637699 DYSFO75923 2080 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 ZNF503-AS2A6NEH8 195 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 SPRY1O43609 319 aaPredicted RBP16.75■□□□□ 0.27
CLN3-262ENST00000637699 AHSA1O95433 338 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 PNMTP11086 282 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 ZNF43P17038 809 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 PCMT1P22061 227 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 ARR3P36575 388 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 CAPZA2P47755 286 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 RPL14P50914 215 aaKnown RBP16.75■□□□□ 0.27
CLN3-262ENST00000637699 TXNL4AP83876 142 aaKnown RBP16.75■□□□□ 0.27
CLN3-262ENST00000637699 SNTB2Q13425 540 aaKnown RBP16.75■□□□□ 0.27
CLN3-262ENST00000637699 DAG1Q14118 895 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 LIN52Q52LA3 116 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 TNFAIP8L3Q5GJ75 292 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 KRT80Q6KB66 452 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 MDP1Q86V88 176 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 CLIP4Q8N3C7 705 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 GPR137CQ8N3F9 429 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 ZNF837Q96EG3 531 aaPredicted RBP16.75■□□□□ 0.27
CLN3-262ENST00000637699 OR52E6Q96RD3 313 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 C20orf27Q9GZN8 174 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 CRLF2Q9HC73 371 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 GPR35Q9HC97 309 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 RAP2CQ9Y3L5 183 aa16.75■□□□□ 0.27
CLN3-262ENST00000637699 B4DSR2 109 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 RPL36A-HNRNPH2H7BZ11 118 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 NPIPB7O75200 414 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 SLC43A1O75387 559 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 SEC14L2O76054 403 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 SERPINE1P05121 402 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 RPS5P46782 204 aaKnown RBP16.74■□□□□ 0.27
CLN3-262ENST00000637699 MPP2Q14168 576 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 CEACAM16Q2WEN9 425 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 CEP85LQ5SZL2 805 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 GLCCI1Q86VQ1 547 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 LRRC34Q8IZ02 419 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 MFSD8Q8NHS3 518 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 STK35Q8TDR2 534 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 CENPHQ9H3R5 247 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 NARFLQ9H6Q4 476 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 LPAR2Q9HBW0 351 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 NOX3Q9HBY0 568 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 SEC14L4Q9UDX3 406 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 RCE1Q9Y256 329 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 ZNF443Q9Y2A4 671 aaPredicted RBP16.74■□□□□ 0.27
CLN3-262ENST00000637699 CMAHPQ9Y471 501 aa16.74■□□□□ 0.27
CLN3-262ENST00000637699 A0A096LPI6 279 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 FTCDNL1E5RQL4 147 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 RGS9O75916 674 aaPredicted RBP16.73■□□□□ 0.27
CLN3-262ENST00000637699 ZNF432O94892 652 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 GTF2E2P29084 291 aaKnown RBP16.73■□□□□ 0.27
CLN3-262ENST00000637699 IL12AP29459 219 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 C1DQ13901 141 aaKnown RBP16.73■□□□□ 0.27
CLN3-262ENST00000637699 SERPINA11Q86U17 422 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 CARM1Q86X55 608 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 ANKK1Q8NFD2 765 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 SSU72Q9NP77 194 aaKnown RBP16.73■□□□□ 0.27
CLN3-262ENST00000637699 P2RX2Q9UBL9 471 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 PRDM4Q9UKN5 801 aa16.73■□□□□ 0.27
CLN3-262ENST00000637699 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.73■□□□□ 0.27
CLN3-262ENST00000637699 A0A0A6YYJ9 748 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 SLCO1B7G3V0H7 640 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 KRT75O95678 551 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 BCHEP06276 602 aa16.72■□□□□ 0.27
CLN3-262ENST00000637699 ALDOCP09972 364 aaKnown RBP16.72■□□□□ 0.27
CLN3-262ENST00000637699 ETFAP13804 333 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms