RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 NOX1Q9Y5S8 564 aa16.18■□□□□ 0.18
CLN3-259ENST00000637551 M0R082 166 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 RAMP1O60894 148 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 CTAG2O75638 210 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ZNF682O95780 498 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 T-ENOLP0DO92 83 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ZNF43P17038 809 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 KLK2P20151 261 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 CRYGSP22914 178 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 GRPRP30550 384 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 TLE4Q04727 773 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ZP4Q12836 540 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ZNF74Q16587 644 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 OR7E24Q6IFN5 339 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 CREB3L2Q70SY1 520 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 FKBP9P1Q75LS8 142 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 PXKQ7Z7A4 578 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 TSPYL5Q86VY4 417 aaPredicted RBP16.17■□□□□ 0.18
CLN3-259ENST00000637551 C17orf78Q8N4C9 275 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ZIC4Q8N9L1 334 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 OR5J2Q8NH18 312 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ZNF417Q8TAU3 575 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 KISS1RQ969F8 398 aaPredicted RBP16.17■□□□□ 0.18
CLN3-259ENST00000637551 ZNF587Q96SQ5 575 aaPredicted RBP16.17■□□□□ 0.18
CLN3-259ENST00000637551 MED18Q9BUE0 208 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 PRR14Q9BWN1 585 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 LINC00470Q9BZP3 86 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 AMBRA1Q9C0C7 1298 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ASB6Q9NWX5 421 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 TAS2R16Q9NYV7 291 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 C6orf203Q9P0P8 240 aaPredicted RBP16.17■□□□□ 0.18
CLN3-259ENST00000637551 B3GAT1Q9P2W7 334 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 A4GNTQ9UNA3 340 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 ENPP4Q9Y6X5 453 aa16.17■□□□□ 0.18
CLN3-259ENST00000637551 CCDC168Q8NDH2 2452 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 NPIPB13A6NJU9 1138 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 NPIPB4C9JG80 1138 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 PDLIM1O00151 329 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 CASKO14936 926 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 ASAH2BP0C7U1 165 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 RHCEP18577 417 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 OR1E2P47887 323 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 TGFBR3Q03167 851 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 PUDPQ08623 228 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 STK11Q15831 433 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 DNAL1Q4LDG9 190 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 CASP12Q6UXS9 341 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 WDR88Q6ZMY6 472 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 VTCN1Q7Z7D3 282 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 RNF217Q8TC41 542 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 TMEM239Q8WW34 195 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 HSD17B8Q92506 261 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 SLC25A36Q96CQ1 311 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 NSMCE2Q96MF7 247 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 SLCO5A1Q9H2Y9 848 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 MOV10Q9HCE1 1003 aaKnown RBP16.16■□□□□ 0.18
CLN3-259ENST00000637551 NGBQ9NPG2 151 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 NANSQ9NR45 359 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 RASSF1Q9NS23 344 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 EDARQ9UNE0 448 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 MED31Q9Y3C7 131 aa16.16■□□□□ 0.18
CLN3-259ENST00000637551 A0A1W2PRQ8 180 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 ARPC2O15144 300 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 PRSS23O95084 383 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 TSPAN19P0C672 248 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 NR1H2P55055 460 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 SH3BGRP55822 239 aaPredicted RBP16.15■□□□□ 0.18
CLN3-259ENST00000637551 PIN1Q13526 163 aaPredicted RBP16.15■□□□□ 0.18
CLN3-259ENST00000637551 DGCR6Q14129 220 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 TRAM2Q15035 370 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 HDDC2Q7Z4H3 204 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 GPAT4Q86UL3 456 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 EPHX4Q8IUS5 362 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 FAM156AQ8NDB6 213 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 LRR1Q96L50 414 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 FNDC11Q9BVV2 318 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 EGFL7Q9UHF1 273 aa16.15■□□□□ 0.18
CLN3-259ENST00000637551 CENPBD1B2RD01 187 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 RPL36A-HNRNPH2H7BZ11 118 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 PLPP3O14495 311 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 TRAF3IP2O43734 574 aaPredicted RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 ZNF432O94892 652 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 SEMG1P04279 462 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 NQO1P15559 274 aaKnown RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 IL32P24001 234 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 SMIM11AP58511 58 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 PMS2P3Q13401 168 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 TRIM25Q14258 630 aaKnown RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 EXOC3L2Q2M3D2 409 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 TIMM23BQ5SRD1 257 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 LCN8Q6JVE9 175 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 AAED1Q7RTV5 226 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 CXorf67Q86X51 503 aaPredicted RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 UEVLDQ8IX04 471 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 PIK3C3Q8NEB9 887 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 ACOT11Q8WXI4 607 aaPredicted RBP16.14■□□□□ 0.17
CLN3-259ENST00000637551 ASB9Q96DX5 294 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 PYURFQ96I23 114 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 C7orf34Q96L11 122 aa16.14■□□□□ 0.17
CLN3-259ENST00000637551 DHRS1Q96LJ7 313 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms