RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 UBDO15205 165 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 CRYAAP02489 173 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 BMP2P12643 396 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 GTF2E2P29084 291 aaKnown RBP16.07■□□□□ 0.16
CLN3-241ENST00000635861 POLR2JP52435 117 aaKnown RBP16.07■□□□□ 0.16
CLN3-241ENST00000635861 UBE2NP61088 152 aaKnown RBP16.07■□□□□ 0.16
CLN3-241ENST00000635861 SNRPD2P62316 118 aaKnown RBP16.07■□□□□ 0.16
CLN3-241ENST00000635861 BNIP2Q12982 314 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 HIKESHIQ53FT3 197 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 ZNF311Q5JNZ3 666 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 C6orf89Q6UWU4 347 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 CLIP4Q8N3C7 705 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 BBS10Q8TAM1 723 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 A4GALTQ9NPC4 353 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 MOKQ9UQ07 419 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 CHST2Q9Y4C5 530 aa16.07■□□□□ 0.16
CLN3-241ENST00000635861 IGHV1-18A0A0C4DH31 117 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 FTCDNL1E5RQL4 147 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 H0YHG0 523 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 RPL36A-HNRNPH2H7BZ11 118 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 OR2T1O43869 369 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 USF1P22415 310 aaPredicted RBP16.06■□□□□ 0.16
CLN3-241ENST00000635861 MRPL19P49406 292 aaKnown RBP16.06■□□□□ 0.16
CLN3-241ENST00000635861 SELENOPP49908 381 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 PDLIM4P50479 330 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 RGNQ15493 299 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 SLC9B1Q4ZJI4 515 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 C6orf10Q5SRN2 563 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 CYB5R2Q6BCY4 276 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 ANKRD16Q6P6B7 361 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 SERPINA11Q86U17 422 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 EPHX4Q8IUS5 362 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 MIER2Q8N344 545 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 ANKS4BQ8N8V4 417 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 TMEM158Q8WZ71 300 aa16.06■□□□□ 0.16
CLN3-241ENST00000635861 GMNCA6NCL1 334 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 RNF212BA8MTL3 300 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 B9A039 149 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 PRG2P13727 222 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 ETS2P15036 469 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 CDH2P19022 906 aaPredicted RBP16.05■□□□□ 0.16
CLN3-241ENST00000635861 THBS2P35442 1172 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 GZMKP49863 264 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 LSM11P83369 360 aaKnown RBP eCLIP16.05■□□□□ 0.16
CLN3-241ENST00000635861 RPS26P11Q5JNZ5 115 aaPredicted RBP16.05■□□□□ 0.16
CLN3-241ENST00000635861 NIPAL3Q6P499 406 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 LSMEM1Q8N8F7 131 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 OR4F15Q8NGB8 312 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 CKAP2Q8WWK9 683 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 GTF2H4Q92759 462 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 BCL2L2Q92843 193 aaPredicted RBP16.05■□□□□ 0.16
CLN3-241ENST00000635861 FBXO17Q96EF6 278 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 ALKBH3Q96Q83 286 aaPredicted RBP16.05■□□□□ 0.16
CLN3-241ENST00000635861 KCNK17Q96T54 332 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 REPIN1Q9BWE0 567 aaKnown RBP16.05■□□□□ 0.16
CLN3-241ENST00000635861 CA10Q9NS85 328 aa16.05■□□□□ 0.16
CLN3-241ENST00000635861 VWC2LB2RUY7 222 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 CLIC1O00299 241 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 AKAP8O43823 692 aaKnown RBP16.04■□□□□ 0.16
CLN3-241ENST00000635861 LGI1O95970 557 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 IGKV3-15P01624 115 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 IGLV1-44P01699 117 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 PNMTP11086 282 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 ZNF43P17038 809 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 PRKAR1BP31321 381 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 SERPINF1P36955 418 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 EFNB3Q15768 340 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 MST1LQ2TV78 715 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 GTDC1Q4AE62 458 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 CCDC121Q6ZUS5 278 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 NET1Q7Z628 596 aaPredicted RBP16.04■□□□□ 0.16
CLN3-241ENST00000635861 CCDC36Q8IYA8 594 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 NANOS1Q8WY41 292 aaKnown RBP16.04■□□□□ 0.16
CLN3-241ENST00000635861 HTRA1Q92743 480 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 VPS33AQ96AX1 596 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 OXGR1Q96P68 337 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 PIMREGQ9BSJ6 248 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 PTDSS2Q9BVG9 487 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 PAIP1Q9H074 479 aaKnown RBP16.04■□□□□ 0.16
CLN3-241ENST00000635861 NSRP1Q9H0G5 558 aaKnown RBP16.04■□□□□ 0.16
CLN3-241ENST00000635861 RPS6KB2Q9UBS0 482 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 PCDHB14Q9Y5E9 798 aa16.04■□□□□ 0.16
CLN3-241ENST00000635861 LOC102725191A0A1B0GVB3 256 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 VSTM5A8MXK1 200 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 AIM2O14862 343 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 ZNF432O94892 652 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 PPIBP23284 216 aaKnown RBP16.03■□□□□ 0.16
CLN3-241ENST00000635861 PPOXP50336 477 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 NAAAQ02083 359 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 EGR4Q05215 589 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 FAM69AQ5T7M9 428 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 GKAP1Q5VSY0 366 aaPredicted RBP16.03■□□□□ 0.16
CLN3-241ENST00000635861 MAVSQ7Z434 540 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 ZNF540Q8NDQ6 660 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 NUP37Q8NFH4 326 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 OR9I1Q8NGQ6 314 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 DNAJA4Q8WW22 397 aaPredicted RBP16.03■□□□□ 0.16
CLN3-241ENST00000635861 SLC38A4Q969I6 547 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 MAGEB18Q96M61 343 aa16.03■□□□□ 0.16
CLN3-241ENST00000635861 OR52B2Q96RD2 323 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms