RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 CLIP4Q8N3C7 705 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 ZNF525Q8N782 197 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 LSMEM1Q8N8F7 131 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 MGARPQ8TDB4 240 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 GTF2H4Q92759 462 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 SLC38A4Q969I6 547 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 OXGR1Q96P68 337 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 KCNK17Q96T54 332 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 PIMREGQ9BSJ6 248 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 SELENONQ9NZV5 590 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 CRNNQ9UBG3 495 aaPredicted RBP10.4□□□□□ -0.74
UPF3B-204ENST00000619445 MOKQ9UQ07 419 aa10.4□□□□□ -0.74
UPF3B-204ENST00000619445 FBN1P35555 2871 aaKnown RBP10.4□□□□□ -0.74
UPF3B-204ENST00000619445 LOC102725191A0A1B0GVB3 256 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 LOC390937A0A1W2PQ73 354 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 PRORSD1PA6NEY8 169 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 POLR3GO15318 223 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 FZD7O75084 574 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 C1QCP02747 245 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 VIMP08670 466 aaKnown RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 PTNP21246 168 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 MAGOHP61326 146 aaKnown RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 LSM11P83369 360 aaKnown RBP eCLIP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SLC25A3Q00325 362 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 BNIP2Q12982 314 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 C1DQ13901 141 aaKnown RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 EFNB3Q15768 340 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SLC9B1Q4ZJI4 515 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 HIKESHIQ53FT3 197 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 FAM91A1Q658Y4 838 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SLC46A3Q7Z3Q1 461 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SERPINA11Q86U17 422 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SNX32Q86XE0 403 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 EPHX4Q8IUS5 362 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ADPRHL1Q8NDY3 354 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 PIK3C3Q8NEB9 887 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 OR6S1Q8NH40 331 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 BCL2L2Q92843 193 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 FBXO17Q96EF6 278 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ALKBH3Q96Q83 286 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 EPYCQ99645 322 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 BEX2Q9BXY8 128 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 CA10Q9NS85 328 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SLC6A13Q9NSD5 602 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 PCDHB14Q9Y5E9 798 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 CORINQ9Y5Q5 1042 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 GMEB1Q9Y692 573 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 IGHV1-18A0A0C4DH31 117 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 RNF212BA8MTL3 300 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 FTCDNL1E5RQL4 147 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 LGI1O95970 557 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 IGKV3-15P01624 115 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 IGLV1-44P01699 117 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 PRG2P13727 222 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 HNF1AP20823 631 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ARR3P36575 388 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SELENOPP49908 381 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 PPOXP50336 477 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 NCALDP61601 193 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ROR2Q01974 943 aaKnown RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 NAAAQ02083 359 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 REEP3Q6NUK4 255 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ULK3Q6PHR2 472 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 DHRS4L2Q6PKH6 230 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 EPGNQ6UW88 154 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 H1FNTQ75WM6 255 aaPredicted RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 GPR137CQ8N3F9 429 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 NUP37Q8NFH4 326 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 VPS33AQ96AX1 596 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SLC25A36Q96CQ1 311 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 C7orf26Q96N11 449 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ANKRD27Q96NW4 1050 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ZNF607Q96SK3 696 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 PAIP1Q9H074 479 aaKnown RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SHARPINQ9H0F6 387 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 RAB1BQ9H0U4 201 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 ZNF442Q9H7R0 627 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 TCF7L2Q9NQB0 619 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 TESQ9UGI8 421 aaKnown RBP10.39□□□□□ -0.75
UPF3B-204ENST00000619445 SLC13A4Q9UKG4 626 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 USH1CQ9Y6N9 552 aa10.39□□□□□ -0.75
UPF3B-204ENST00000619445 MALRD1Q5VYJ5 2156 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 TRAV36DV7A0A075B6V5 113 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 EVPLLA8MZ36 301 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 GPRIN2O60269 458 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 ENTPD5O75356 428 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 SERPINB7O75635 380 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 ZNF432O94892 652 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 CBR1P16152 277 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 RPS5P46782 204 aaKnown RBP10.38□□□□□ -0.75
UPF3B-204ENST00000619445 CLDN17P56750 224 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 ALG10BQ5I7T1 473 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 RPS26P11Q5JNZ5 115 aaPredicted RBP10.38□□□□□ -0.75
UPF3B-204ENST00000619445 LRIF1Q5T3J3 769 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 GCNT6Q5T4J0 391 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 SWT1Q5T5J6 900 aaKnown RBP10.38□□□□□ -0.75
UPF3B-204ENST00000619445 UGT2A3Q6UWM9 527 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 SCAIQ8N9R8 606 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 OR9I1Q8NGQ6 314 aa10.38□□□□□ -0.75
UPF3B-204ENST00000619445 TLCD1Q96CP7 247 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms