RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 LRIF1Q5T3J3 769 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 C6orf52Q5T4I8 152 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 AGBL2Q5U5Z8 902 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 REEP3Q6NUK4 255 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 ANKRD16Q6P6B7 361 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 PODNL1Q6PEZ8 512 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 C6orf89Q6UWU4 347 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 CXXC5Q7LFL8 322 aaKnown RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 EPHX4Q8IUS5 362 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 KDM8Q8N371 416 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 GPR137CQ8N3F9 429 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 LSMEM1Q8N8F7 131 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 MAGEE2Q8TD90 523 aaPredicted RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 DNAJA4Q8WW22 397 aaPredicted RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 DYDC1Q8WWB3 177 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 PROX1Q92786 737 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 KTI12Q96EK9 354 aaPredicted RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 OXGR1Q96P68 337 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 TNFRSF13CQ96RJ3 184 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 CCDC28BQ9BUN5 200 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 PTDSS2Q9BVG9 487 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 CA10Q9NS85 328 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 SLC25A37Q9NYZ2 338 aa8.55□□□□□ -1.04
VRK3-216ENST00000599342 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 TESQ9UGI8 421 aaKnown RBP8.55□□□□□ -1.04
VRK3-216ENST00000599342 TRAV36DV7A0A075B6V5 113 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 A0A1B0GWA3 101 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 PRORSD1PA6NEY8 169 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 EVPLLA8MZ36 301 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 M0R082 166 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 GPRIN2O60269 458 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 SERPINB7O75635 380 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 F12P00748 615 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 HOXB1P14653 301 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 NQO1P15559 274 aaKnown RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 HOXB9P17482 250 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 SLC6A2P23975 617 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 SERPINF1P36955 418 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 IDH3AP50213 366 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 TUBA1BP68363 451 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 TUBA4AP68366 448 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 VLDLRP98155 873 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 NAAAQ02083 359 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 SCARB2Q14108 478 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 MFSD13AQ14CX5 517 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 C3orf36Q3SXR2 165 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 ULK3Q6PHR2 472 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 DHRS4L2Q6PKH6 230 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 BLOC1S3Q6QNY0 202 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 VHLLQ6RSH7 139 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 TUBA1AQ71U36 451 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 LINGO2Q7L985 606 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 SLC46A3Q7Z3Q1 461 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 NET1Q7Z628 596 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 HIPK1Q86Z02 1210 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 PIK3C3Q8NEB9 887 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 ANKK1Q8NFD2 765 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 BHLHE22Q8NFJ8 381 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 ZNF417Q8TAU3 575 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 C10orf105Q8TEF2 133 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 BCL2L2Q92843 193 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 SLC47A1Q96FL8 570 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 ZNF607Q96SK3 696 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 ZNF587Q96SQ5 575 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 EPYCQ99645 322 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 EBF4Q9BQW3 602 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 PIMREGQ9BSJ6 248 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 TMEM27Q9HBJ8 222 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 SLCO1B3Q9NPD5 702 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 VAPAQ9P0L0 249 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 SEC14L4Q9UDX3 406 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 ANGPT4Q9Y264 503 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 CADP27708 2225 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 CR1P17927 2039 aa8.54□□□□□ -1.04
VRK3-216ENST00000599342 CHD3Q12873 2000 aaKnown RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 NSD1Q96L73 2696 aaPredicted RBP8.54□□□□□ -1.04
VRK3-216ENST00000599342 A0A096LNT2 108 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 VSTM5A8MXK1 200 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 B9A039 149 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 RPL36A-HNRNPH2H7BZ11 118 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 PDE5AO76074 875 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 LY6HO94772 140 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 ZNF432O94892 652 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 ERCC1P07992 297 aaPredicted RBP8.53□□□□□ -1.04
VRK3-216ENST00000599342 OR4A8P0C604 315 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 CECR9P0C854 216 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 USF1P22415 310 aaPredicted RBP8.53□□□□□ -1.04
VRK3-216ENST00000599342 CBLP22681 906 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 HTR2AP28223 471 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 AQP1P29972 269 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 GRPRP30550 384 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 CAPZA2P47755 286 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 PDLIM4P50479 330 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 AQP5P55064 265 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 RGS8P57771 180 aaPredicted RBP8.53□□□□□ -1.04
VRK3-216ENST00000599342 SQLEQ14534 574 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 CARTPTQ16568 116 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 SWI5Q1ZZU3 235 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 AGKQ53H12 422 aa8.53□□□□□ -1.04
VRK3-216ENST00000599342 PAGE3Q5JUK9 113 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms