RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 VEZF1Q14119 521 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 GABRA6Q16445 453 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 OR7E24Q6IFN5 339 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 ADAM5Q6NVV9 412 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 ERICH5Q6P6B1 374 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 CREB3L2Q70SY1 520 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 KRTAP1-3Q8IUG1 177 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 C17orf78Q8N4C9 275 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 POU5F2Q8N7G0 328 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 POMGNT2Q8NAT1 580 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 ADPRHL1Q8NDY3 354 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 OR4D11Q8NGI4 311 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 OR6S1Q8NH40 331 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 VANGL1Q8TAA9 524 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-205ENST00000595028 ZNF417Q8TAU3 575 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 RNF217Q8TC41 542 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 SLC26A7Q8TE54 656 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 RASSF5Q8WWW0 418 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 IGFBPL1Q8WX77 278 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 AKAP1Q92667 903 aaKnown RBP eCLIP13.28□□□□□ -0.28
TRIM28-205ENST00000595028 RCN3Q96D15 328 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 ZNF587Q96SQ5 575 aaPredicted RBP13.28□□□□□ -0.28
TRIM28-205ENST00000595028 EPYCQ99645 322 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 TMEM43Q9BTV4 400 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 GID8Q9NWU2 228 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 USP22Q9UPT9 525 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 B3GALT5Q9Y2C3 310 aa13.28□□□□□ -0.28
TRIM28-205ENST00000595028 DPRXA6NFQ7 191 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 CPSF4LA6NMK7 179 aaKnown RBP13.27□□□□□ -0.29
TRIM28-205ENST00000595028 CHP2O43745 196 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 CCDC22O60826 627 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 SMPD2O60906 423 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 PTNP21246 168 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 MPGP29372 298 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 SELENOPP49908 381 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 MFSD13AQ14CX5 517 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 ENTPD8Q5MY95 495 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 C9orf135Q5VTT2 229 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 CXXC5Q7LFL8 322 aaKnown RBP13.27□□□□□ -0.29
TRIM28-205ENST00000595028 RBM45Q8IUH3 476 aaKnown RBP13.27□□□□□ -0.29
TRIM28-205ENST00000595028 LRRC75A-AS1Q8N1F1 130 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 KDM8Q8N371 416 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF611Q8N823 705 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 KBTBD8Q8NFY9 601 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 OR52N5Q8NH56 324 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 RP9Q8TA86 221 aaKnown RBP13.27□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF583Q96ND8 569 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 MUS81Q96NY9 551 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 ALKBH3Q96Q83 286 aaPredicted RBP13.27□□□□□ -0.29
TRIM28-205ENST00000595028 PCDHAC1Q9H158 963 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 RCE1Q9Y256 329 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 SLC25A15Q9Y619 301 aa13.27□□□□□ -0.29
TRIM28-205ENST00000595028 A0A1W2PR80 420 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 OR6C65A6NJZ3 312 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 LYPD3O95274 346 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 BGLAPP02818 100 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 COX4I1P13073 169 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF43P17038 809 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 TGFBR3Q03167 851 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 NIPAL3Q6P499 406 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 LINC00114Q6XXX2 140 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 H1FNTQ75WM6 255 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-205ENST00000595028 SPATA21Q7Z572 469 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 ABHD12BQ7Z5M8 362 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-205ENST00000595028 ARPINQ7Z6K5 226 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 TSPYL5Q86VY4 417 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-205ENST00000595028 SCAIQ8N9R8 606 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 WFDC11Q8NEX6 87 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 LILRB1Q8NHL6 650 aaPredicted RBP13.26□□□□□ -0.29
TRIM28-205ENST00000595028 ADAMTS16Q8TE57 1224 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 PROX1Q92786 737 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 SLC41A3Q96GZ6 507 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 OXGR1Q96P68 337 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 CORINQ9Y5Q5 1042 aa13.26□□□□□ -0.29
TRIM28-205ENST00000595028 ALPK2Q86TB3 2170 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 TRAPPC13A5PLN9 417 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF587BE7ETH6 402 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 TRAF3IP2O43734 574 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-205ENST00000595028 TMCC2O75069 709 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 ZNF432O94892 652 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 THY1P04216 161 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 CBLP22681 906 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 HOXC12P31275 282 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 CLDN17P56750 224 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 NKX6-1P78426 367 aaPredicted RBP13.25□□□□□ -0.29
TRIM28-205ENST00000595028 SLC25A3Q00325 362 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 LGALS3BPQ08380 585 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 C1DQ13901 141 aaKnown RBP13.25□□□□□ -0.29
TRIM28-205ENST00000595028 Q5PR19 223 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 WDR88Q6ZMY6 472 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 TREML1Q86YW5 311 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 OR2T12Q8NG77 320 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 TMEM171Q8WVE6 324 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 NEUROG1Q92886 237 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 FBXW5Q969U6 566 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 MOGAT1Q96PD6 335 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 ASPNQ9BXN1 380 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 LINC00470Q9BZP3 86 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 SLC17A5Q9NRA2 495 aa13.25□□□□□ -0.29
TRIM28-205ENST00000595028 CMTM6Q9NX76 183 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms