RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GMEB1Q9Y692 573 aa17.88■□□□□ 0.45
SHMT1-209ENST00000582653 FBN1P35555 2871 aaKnown RBP17.88■□□□□ 0.45
SHMT1-209ENST00000582653 CR1P17927 2039 aa17.88■□□□□ 0.45
SHMT1-209ENST00000582653 IGKV1D-42A0A075B6H8 117 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 EVPLLA8MZ36 301 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 GPRIN2O60269 458 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 PAX7P23759 505 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 CLDN17P56750 224 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 CHRNB3Q05901 458 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 ALG10BQ5I7T1 473 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 CLEC2AQ6UVW9 174 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 C6orf89Q6UWU4 347 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 CXXC5Q7LFL8 322 aaKnown RBP17.87■□□□□ 0.45
SHMT1-209ENST00000582653 ABHD12BQ7Z5M8 362 aaPredicted RBP17.87■□□□□ 0.45
SHMT1-209ENST00000582653 KRT73Q86Y46 540 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 OR1K1Q8NGR3 316 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 CPPED1Q9BRF8 314 aaPredicted RBP17.87■□□□□ 0.45
SHMT1-209ENST00000582653 SPATA5L1Q9BVQ7 753 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 TMEM38AQ9H6F2 299 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 MOKQ9UQ07 419 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 PMF1-BGLAPU3KQ54 211 aa17.87■□□□□ 0.45
SHMT1-209ENST00000582653 CHD3Q12873 2000 aaKnown RBP17.87■□□□□ 0.45
SHMT1-209ENST00000582653 CUBNO60494 3623 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 A0A096LNT2 108 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 HMGB1P1B2RPK0 211 aaPredicted RBP17.86■□□□□ 0.45
SHMT1-209ENST00000582653 ZNF587BE7ETH6 402 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 ATP6V1G2-DDX39BF2Z307 99 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 ZNF43P17038 809 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 SLC6A2P23975 617 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 GTF2E2P29084 291 aaKnown RBP17.86■□□□□ 0.45
SHMT1-209ENST00000582653 LOXL1Q08397 574 aaPredicted RBP17.86■□□□□ 0.45
SHMT1-209ENST00000582653 TBRG1Q3YBR2 411 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 RUNDC3AQ59EK9 446 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 KLHL24Q6TFL4 600 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 RNF217Q8TC41 542 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 BCL2L2Q92843 193 aaPredicted RBP17.86■□□□□ 0.45
SHMT1-209ENST00000582653 MAGEB18Q96M61 343 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 TNFRSF13CQ96RJ3 184 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 C12orf10Q9HB07 376 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 OBP2BQ9NPH6 170 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 B3GAT1Q9P2W7 334 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 ALPK2Q86TB3 2170 aa17.86■□□□□ 0.45
SHMT1-209ENST00000582653 A0A096LPE4 126 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 A0A1W2PPZ6 126 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 OR6C65A6NJZ3 312 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 A8MV72 311 aaPredicted RBP17.85■□□□□ 0.45
SHMT1-209ENST00000582653 M0R082 166 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 TPST2O60704 377 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 ABCA1O95477 2261 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 GRPRP30550 384 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 TUBA1BP68363 451 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 TUBA4AP68366 448 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 ROR2Q01974 943 aaKnown RBP17.85■□□□□ 0.45
SHMT1-209ENST00000582653 SELPLGQ14242 412 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 FAM69AQ5T7M9 428 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 ULK3Q6PHR2 472 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 TUBA1AQ71U36 451 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 HDXQ7Z353 690 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 ZNF417Q8TAU3 575 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 DNAJA4Q8WW22 397 aaPredicted RBP17.85■□□□□ 0.45
SHMT1-209ENST00000582653 SLC38A4Q969I6 547 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 OXGR1Q96P68 337 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 ZNF587Q96SQ5 575 aaPredicted RBP17.85■□□□□ 0.45
SHMT1-209ENST00000582653 LINC00470Q9BZP3 86 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 CORO2BQ9UQ03 480 aa17.85■□□□□ 0.45
SHMT1-209ENST00000582653 IGHV1-18A0A0C4DH31 117 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 PRORSD1PA6NEY8 169 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 OR2T1O43869 369 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 ZNF432O94892 652 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 MFN2O95140 757 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 F12P00748 615 aaPredicted RBP17.84■□□□□ 0.45
SHMT1-209ENST00000582653 SLC25A16P16260 332 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 EFNA4P52798 201 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 RGS8P57771 180 aaPredicted RBP17.84■□□□□ 0.45
SHMT1-209ENST00000582653 C1DQ13901 141 aaKnown RBP17.84■□□□□ 0.45
SHMT1-209ENST00000582653 OR1Q1Q15612 314 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 SWI5Q1ZZU3 235 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 MST1LQ2TV78 715 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 HMBOX1Q6NT76 420 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 PODNL1Q6PEZ8 512 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 RETREG3Q86VR2 466 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 PTOV1Q86YD1 416 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 ARMC8Q8IUR7 673 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 SMYD1Q8NB12 490 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 HIPK4Q8NE63 616 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 PROX1Q92786 737 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 SLC47A1Q96FL8 570 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 ZNF607Q96SK3 696 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 RABEP2Q9H5N1 569 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 ZNF385DQ9H6B1 395 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 NPHS2Q9NP85 383 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 KLHL14Q9P2G3 628 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 LEF1Q9UJU2 399 aaPredicted RBP17.84■□□□□ 0.45
SHMT1-209ENST00000582653 NDUFAF1Q9Y375 327 aa17.84■□□□□ 0.45
SHMT1-209ENST00000582653 HEATR1Q9H583 2144 aaKnown RBP17.84■□□□□ 0.45
SHMT1-209ENST00000582653 TRAV36DV7A0A075B6V5 113 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 AIM2O14862 343 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 FZD7O75084 574 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 SERPINB7O75635 380 aa17.83■□□□□ 0.44
SHMT1-209ENST00000582653 IFNA2P01563 188 aa17.83■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms