RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 KEAP1Q14145 624 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 TSPO2Q5TGU0 170 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 CREB3L2Q70SY1 520 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 UEVLDQ8IX04 471 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 ZNF433Q8N7K0 673 aaPredicted RBP17.2■□□□□ 0.34
SS18-209ENST00000578595 HSD17B8Q92506 261 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 MUCL1Q96DR8 90 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 OXGR1Q96P68 337 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 MOGAT1Q96PD6 335 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 ALKBH3Q96Q83 286 aaPredicted RBP17.2■□□□□ 0.34
SS18-209ENST00000578595 ARL8BQ9NVJ2 186 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 MALT1Q9UDY8 824 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 EGFL7Q9UHF1 273 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 B3GALT5Q9Y2C3 310 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 CORINQ9Y5Q5 1042 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 ALPK2Q86TB3 2170 aa17.2■□□□□ 0.34
SS18-209ENST00000578595 ENO4A6NNW6 628 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 AKAP8O43823 692 aaKnown RBP17.19■□□□□ 0.34
SS18-209ENST00000578595 CH25HO95992 272 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 BGLAPP02818 100 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 TCN1P20061 433 aaPredicted RBP17.19■□□□□ 0.34
SS18-209ENST00000578595 AHCYP23526 432 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 SELENOPP49908 381 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 SELENOWP63302 87 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 POU3F1Q03052 451 aaPredicted RBP17.19■□□□□ 0.34
SS18-209ENST00000578595 PPA1Q15181 289 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 C8orf82Q6P1X6 216 aaPredicted RBP17.19■□□□□ 0.34
SS18-209ENST00000578595 WDR88Q6ZMY6 472 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 ABHD12BQ7Z5M8 362 aaPredicted RBP17.19■□□□□ 0.34
SS18-209ENST00000578595 VTCN1Q7Z7D3 282 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 TSPYL5Q86VY4 417 aaPredicted RBP17.19■□□□□ 0.34
SS18-209ENST00000578595 CCDC197Q8NCU1 140 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 OR52N5Q8NH56 324 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 MPP4Q96JB8 637 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 HS3ST6Q96QI5 342 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 ABCD2Q9UBJ2 740 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 ST6GALNAC2Q9UJ37 374 aa17.19■□□□□ 0.34
SS18-209ENST00000578595 A0A1W2PR80 420 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 C11orf98E9PRG8 122 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 CLOCKO15516 846 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 OR5F1O95221 314 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 FAM107AO95990 144 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 THY1P04216 161 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 IFNW1P05000 195 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 ADORA3P0DMS8 318 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 YAP1P46937 504 aaKnown RBP17.18■□□□□ 0.34
SS18-209ENST00000578595 NR1H2P55055 460 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 TGFBR3Q03167 851 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 PIN1Q13526 163 aaPredicted RBP17.18■□□□□ 0.34
SS18-209ENST00000578595 IFI44LQ53G44 452 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 PAMR1Q6UXH9 720 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 EPHX4Q8IUS5 362 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 ZIC4Q8N9L1 334 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 POMGNT2Q8NAT1 580 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 HSH2DQ96JZ2 352 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 USB1Q9BQ65 265 aaKnown RBP17.18■□□□□ 0.34
SS18-209ENST00000578595 PCDHAC1Q9H158 963 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 RIMS3Q9UJD0 308 aa17.18■□□□□ 0.34
SS18-209ENST00000578595 CSMD1Q96PZ7 3565 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 OR5H1A6NKK0 313 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 ZNF587BE7ETH6 402 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 SLC43A1O75387 559 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 MT-ATP6P00846 226 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 RAF1P04049 648 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 HIST1H2ABP04908 130 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 ART1P52961 327 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 FOXG1P55316 489 aaPredicted RBP17.17■□□□□ 0.34
SS18-209ENST00000578595 SLC25A3Q00325 362 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 LTBQ06643 244 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 LGALS3BPQ08380 585 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 PUDPQ08623 228 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 CARD17Q5XLA6 110 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 KLHL24Q6TFL4 600 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 C16orf89Q6UX73 402 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 HIST3H2AQ7L7L0 130 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 SCAIQ8N9R8 606 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 FAM156AQ8NDB6 213 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 OR5J2Q8NH18 312 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 OR6S1Q8NH40 331 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 GEMIN6Q8WXD5 167 aaKnown RBP17.17■□□□□ 0.34
SS18-209ENST00000578595 HIST1H2ACQ93077 130 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 POLR2J2Q9GZM3 115 aaKnown RBP17.17■□□□□ 0.34
SS18-209ENST00000578595 POLR2J3Q9H1A7 115 aaKnown RBP17.17■□□□□ 0.34
SS18-209ENST00000578595 ESRP2Q9H6T0 727 aaKnown RBP17.17■□□□□ 0.34
SS18-209ENST00000578595 PLEKHF2Q9H8W4 249 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 NANSQ9NR45 359 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 CCM2LQ9NUG4 571 aaPredicted RBP17.17■□□□□ 0.34
SS18-209ENST00000578595 NDE1Q9NXR1 346 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 RPS6KA6Q9UK32 745 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 V9GYQ6 96 aa17.17■□□□□ 0.34
SS18-209ENST00000578595 ARID1AO14497 2285 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 A0A1W2PPR1 153 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 KLF4O43474 513 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 LYPD3O95274 346 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 ITGA5P08648 1049 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 MPGP29372 298 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 IST1P53990 364 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 TIMM23BQ5SRD1 257 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 GLYATQ6IB77 296 aa17.16■□□□□ 0.34
SS18-209ENST00000578595 OR7E24Q6IFN5 339 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms