RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TRIM3O75382 744 aaPredicted RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 OR2B3O76000 313 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 CD14P08571 375 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 EPXP11678 715 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 APEHP13798 732 aaKnown RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 EDNRAP25101 427 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 CDKN2AP42771 156 aaKnown RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 CCR4P51679 360 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 EPHA4P54764 986 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 EGR4Q05215 589 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 PYHIN1Q6K0P9 492 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 LEG1Q6P5S2 330 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 LYPD4Q6UWN0 246 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 UNQ9370/PRO34162Q6UXP9 181 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 UTS2BQ765I0 119 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 FAM122BQ7Z309 247 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 GPR135Q8IZ08 494 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 DTX3Q8N9I9 347 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 RPS4Y2Q8TD47 263 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 TSLPQ969D9 159 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 LCORQ96JN0 433 aaPredicted RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 RNF170Q96K19 258 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 Q96M85 177 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 FYTTD1Q96QD9 318 aaKnown RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 OR8D2Q9GZM6 311 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 MMP25Q9NPA2 562 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 NANSQ9NR45 359 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ABRACLQ9P1F3 81 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 CA14Q9ULX7 337 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 HEATR5AQ86XA9 2040 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 RHPN2P1A8MT19 583 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 A8MUA0 341 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 FLRT2O43155 660 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ORC5O43913 435 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 GPRIN2O60269 458 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 SDC3O75056 442 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 DDAH2O95865 285 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ASAH2BP0C7U1 165 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ATF1P18846 271 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 IGFBP4P22692 258 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 SLC6A1P30531 599 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 SLC25A1P53007 311 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 MRPS15P82914 257 aaKnown RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 LTBQ06643 244 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 SMAD4Q13485 552 aaKnown RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 GPR176Q14439 515 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ALG10Q5BKT4 473 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ZNF684Q5T5D7 378 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 OVCH1Q7RTY7 1134 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 SYT9Q86SS6 491 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 C10orf53Q8N6V4 93 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 OR5H6Q8NGV6 325 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ZNF721Q8TF20 911 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.19□□□□□ -0.94
VPS53-220ENST00000576149 PHYHIPQ92561 330 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ADIPOR1Q96A54 375 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ZNF524Q96C55 264 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 MVB12AQ96EY5 273 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 OR14A2Q96R54 314 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 PDCD1LG2Q9BQ51 273 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 ALG12Q9BV10 488 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 PCED1AQ9H1Q7 454 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 LAMP5Q9UJQ1 280 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 SLC6A5Q9Y345 797 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 RNF215Q9Y6U7 377 aa9.19□□□□□ -0.94
VPS53-220ENST00000576149 C4orf47A7E2U8 309 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 EEF1E1O43324 174 aaKnown RBP9.18□□□□□ -0.94
VPS53-220ENST00000576149 AHCYP23526 432 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 SDHAP31040 664 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 UQCRC1P31930 480 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 PSMB10P40306 273 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 AGFG1P52594 562 aaKnown RBP9.18□□□□□ -0.94
VPS53-220ENST00000576149 NXPH1P58417 271 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 CTXN1P60606 82 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 CD83Q01151 205 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 NDUFA5Q16718 116 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 HACD4Q5VWC8 232 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 ASB18Q6ZVZ8 466 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 NOXA1Q86UR1 476 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 EXD3Q8N9H8 876 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 CREB3L1Q96BA8 519 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 ADOQ96SZ5 270 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 BEX2Q9BXY8 128 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 ADAM19Q9H013 955 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 C12orf10Q9HB07 376 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 RPRD1BQ9NQG5 326 aaKnown RBP9.18□□□□□ -0.94
VPS53-220ENST00000576149 UCKL1Q9NWZ5 548 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 MRTO4Q9UKD2 239 aaKnown RBP9.18□□□□□ -0.94
VPS53-220ENST00000576149 GON4LQ3T8J9 2241 aa9.18□□□□□ -0.94
VPS53-220ENST00000576149 INMT-MINDY4F8WBC2 141 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 CPNE3O75131 537 aaKnown RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 SERPINI2O75830 405 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 TXNDC12O95881 172 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 SNRPBP14678 240 aaKnown RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 OR1D5P58170 312 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 HSD11B2P80365 405 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 RPL6Q02878 288 aaKnown RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 CDK10Q15131 360 aa9.17□□□□□ -0.94
VPS53-220ENST00000576149 ELAVL1Q15717 326 aaKnown RBP9.17□□□□□ -0.94
VPS53-220ENST00000576149 CCDC85BQ15834 202 aaPredicted RBP9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms