RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 RPL14P50914 215 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 OR2B6P58173 313 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 LGALS3BPQ08380 585 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 NRF1Q16656 503 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 SWI5Q1ZZU3 235 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 FAM174BQ3ZCQ3 159 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 MMEL1Q495T6 779 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 GPAT3Q53EU6 434 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 MRPL2Q5T653 305 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 ANXA8L1Q5VT79 327 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 C9orf135Q5VTT2 229 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 OGFOD2Q6N063 350 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 SLC22A25Q6T423 547 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 PAQR6Q6TCH4 344 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 TMEM108Q6UXF1 575 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 CASP12Q6UXS9 341 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 UBE2J2Q8N2K1 259 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 TMEM99Q8N816 258 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 ZNF563Q8TA94 476 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 C10orf105Q8TEF2 133 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 BORCS5Q969J3 196 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 SLC35B4Q969S0 331 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 EME1Q96AY2 570 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 TMEM45BQ96B21 275 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 TRNT1Q96Q11 434 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 RHNO1Q9BSD3 238 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 REPIN1Q9BWE0 567 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 MYLK2Q9H1R3 596 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 NELFAQ9H3P2 528 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 DENND2DQ9H6A0 471 aaPredicted RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 MANSC1Q9H8J5 431 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 MRGBPQ9NV56 204 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 AIG1Q9NVV5 245 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 RLIMQ9NVW2 624 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 EMC3Q9P0I2 261 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 MARCOQ9UEW3 520 aaPredicted RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 RSL24D1Q9UHA3 163 aaKnown RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 PCDHGB4Q9UN71 923 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 GPR45Q9Y5Y3 372 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 SPIN1Q9Y657 262 aaPredicted RBP5.87□□□□□ -1.47
VPS53-213ENST00000572334 DSPPQ9NZW4 1301 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 WNK2Q9Y3S1 2297 aa5.87□□□□□ -1.47
VPS53-213ENST00000572334 DYSFO75923 2080 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 IGHV1-18A0A0C4DH31 117 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 SLC35F4A4IF30 521 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 CDHR4A6H8M9 788 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 CCDC154A6NI56 674 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 RNF212BA8MTL3 300 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ATP6V1G2-DDX39BF2Z307 99 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 CASQ2O14958 399 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 GSC2O15499 205 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 EDF1O60869 148 aaKnown RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 FZD7O75084 574 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 NPIPB7O75200 414 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 AKR7A3O95154 331 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 TP53P04637 393 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 GSNP06396 782 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 PGRP06401 933 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 IGFBP1P08833 259 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 GKN3PP0CG01 181 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 FAM157CP0CG43 387 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 PRG2P13727 222 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 LBPP18428 481 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 FKBP2P26885 142 aaKnown RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 MPGP29372 298 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 S100A3P33764 101 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 SLC1A3P43003 542 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 HTR3AP46098 478 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 FABP6P51161 128 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 POLR2HP52434 150 aaKnown RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 NUDT6P53370 316 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 NME5P56597 212 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 WDR4P57081 412 aaKnown RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 TUBA1BP68363 451 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 SLC35A1P78382 337 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 BST1Q10588 318 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 BNIP2Q12982 314 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 CEACAM7Q14002 265 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 DPY19L1Q2PZI1 675 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 CHRFAM7AQ494W8 412 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 HIKESHIQ53FT3 197 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ATAD3BQ5T9A4 648 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 OR7E24Q6IFN5 339 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ZNF544Q6NX49 715 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ZFP1Q6P2D0 407 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 PODNL1Q6PEZ8 512 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 KLHL17Q6TDP4 642 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 IZUMO2Q6UXV1 221 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ZNF836Q6ZNA1 936 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 TUBA1AQ71U36 451 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 MAVSQ7Z434 540 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 MYPOPQ86VE0 399 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 VRK2Q86Y07 508 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 EPHX4Q8IUS5 362 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 CMIPQ8IY22 773 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 FBXL14Q8N1E6 418 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 C17orf78Q8N4C9 275 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 ARIH2OSQ8N7S6 290 aa5.86□□□□□ -1.47
VPS53-213ENST00000572334 C1orf162Q8NEQ5 155 aaPredicted RBP5.86□□□□□ -1.47
VPS53-213ENST00000572334 OR9K2Q8NGE7 335 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms