RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 LINC00471Q8N535 108 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 OR6K3Q8NGY3 331 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 LIPHQ8WWY8 451 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 NANOS1Q8WY41 292 aaKnown RBP18.34■□□□□ 0.53
VPS53-210ENST00000571456 ROBO4Q8WZ75 1007 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 TAAR8Q969N4 342 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 INTS12Q96CB8 462 aaKnown RBP18.34■□□□□ 0.53
VPS53-210ENST00000571456 FANCFQ9NPI8 374 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 MAN2C1Q9NTJ4 1040 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 ZNF229Q9UJW7 825 aa18.34■□□□□ 0.53
VPS53-210ENST00000571456 LOC102725191A0A1B0GVB3 256 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 A0A1W2PNV4 684 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 YES1P07947 543 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 YAP1P46937 504 aaKnown RBP18.33■□□□□ 0.52
VPS53-210ENST00000571456 PCYT1AP49585 367 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 POU4F3Q15319 338 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 ZNF74Q16587 644 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 TMEM225Q6GV28 225 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 H1FNTQ75WM6 255 aaPredicted RBP18.33■□□□□ 0.52
VPS53-210ENST00000571456 TGIF2LYQ8IUE0 185 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 NAXEQ8NCW5 288 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 TMEM255BQ8WV15 326 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 SLC25A36Q96CQ1 311 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 PSD2Q9BQI7 771 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 NANSQ9NR45 359 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 MRPL39Q9NYK5 338 aaKnown RBP18.33■□□□□ 0.52
VPS53-210ENST00000571456 C6orf203Q9P0P8 240 aaPredicted RBP18.33■□□□□ 0.52
VPS53-210ENST00000571456 FOXD3Q9UJU5 478 aaPredicted RBP18.33■□□□□ 0.52
VPS53-210ENST00000571456 TMEM5Q9Y2B1 443 aa18.33■□□□□ 0.52
VPS53-210ENST00000571456 KDM4EB2RXH2 506 aaPredicted RBP18.32■□□□□ 0.52
VPS53-210ENST00000571456 J3KTA2 159 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 GADD45GO95257 159 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 BGLAPP02818 100 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 HIST1H2ABP04908 130 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 CD8BP10966 210 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 IFNGR2P38484 337 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 HMGA2P52926 109 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 ZNF730Q6ZMV8 503 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 MBOAT2Q6ZWT7 520 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 HIST3H2AQ7L7L0 130 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 ADGRG5Q8IZF4 528 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 C10orf53Q8N6V4 93 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 ABHD3Q8WU67 409 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 HIST1H2ACQ93077 130 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 ENKD1Q9H0I2 346 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 CCM2LQ9NUG4 571 aaPredicted RBP18.32■□□□□ 0.52
VPS53-210ENST00000571456 PARPBPQ9NWS1 579 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 AURKCQ9UQB9 309 aa18.32■□□□□ 0.52
VPS53-210ENST00000571456 MSTNO14793 375 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 TNFSF13O75888 250 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 GRPRP30550 384 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 UGT2B15P54855 530 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 PRKCDQ05655 676 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 GALNT5Q7Z7M9 940 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 STK32CQ86UX6 486 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 CCDC71Q8IV32 467 aaPredicted RBP18.31■□□□□ 0.52
VPS53-210ENST00000571456 GCNT2Q8N0V5 402 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 TMEM99Q8N816 258 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 ACBD4Q8NC06 268 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 PAPD5Q8NDF8 572 aaKnown RBP18.31■□□□□ 0.52
VPS53-210ENST00000571456 OR5J2Q8NH18 312 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 SLC7A13Q8TCU3 470 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 CANT1Q8WVQ1 401 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 SGTBQ96EQ0 304 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 RSRC1Q96IZ7 334 aaKnown RBP18.31■□□□□ 0.52
VPS53-210ENST00000571456 KCNJ16Q9NPI9 418 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 MEPEQ9NQ76 525 aaPredicted RBP18.31■□□□□ 0.52
VPS53-210ENST00000571456 TMCC3Q9ULS5 477 aa18.31■□□□□ 0.52
VPS53-210ENST00000571456 ZNF716A6NP11 495 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 AKAP8O43823 692 aaKnown RBP18.3■□□□□ 0.52
VPS53-210ENST00000571456 AKR7A3O95154 331 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 CNOT4O95628 575 aaKnown RBP18.3■□□□□ 0.52
VPS53-210ENST00000571456 KLK2P20151 261 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 AGTR1P30556 359 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 PEX19P40855 299 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 KIR2DL2P43627 348 aaPredicted RBP18.3■□□□□ 0.52
VPS53-210ENST00000571456 SLC9A3P48764 834 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 SPIBQ01892 262 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 SLC17A1Q14916 467 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 TAF11Q15544 211 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 ZSCAN26Q16670 478 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 FBXL19-AS1Q494R0 122 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 FGD3Q5JSP0 725 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 OR2T5Q6IEZ7 315 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 MEX3BQ6ZN04 569 aaKnown RBP18.3■□□□□ 0.52
VPS53-210ENST00000571456 CNEP1R1Q8N9A8 125 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 OR2T29Q8NH02 315 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 BPIFA2Q96DR5 249 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 DUS3LQ96G46 650 aaKnown RBP18.3■□□□□ 0.52
VPS53-210ENST00000571456 OXGR1Q96P68 337 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 CHID1Q9BWS9 393 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 GSX1Q9H4S2 264 aaPredicted RBP18.3■□□□□ 0.52
VPS53-210ENST00000571456 PLSCR4Q9NRQ2 329 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 RHCGQ9UBD6 479 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 PROCRQ9UNN8 238 aa18.3■□□□□ 0.52
VPS53-210ENST00000571456 A0A087WUU8 490 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 IGHV3-15A0A0B4J1V0 119 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 M0R082 166 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 OR7A10O76100 309 aa18.29■□□□□ 0.52
VPS53-210ENST00000571456 OR6A2O95222 327 aa18.29■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms