RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ACER2Q5QJU3 275 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 C1orf140Q5VVS0 124 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 TIGD3Q6B0B8 471 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 IL20RBQ6UXL0 311 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 TUBA1AQ71U36 451 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 SLC46A3Q7Z3Q1 461 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 JAZF1Q86VZ6 243 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 DTX1Q86Y01 620 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 ADGRG3Q86Y34 549 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 IQCF1Q8N6M8 205 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 ACBD7Q8N6N7 88 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 NANOGP1Q8N7R0 232 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 OR2M3Q8NG83 312 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 OR10G3Q8NGC4 313 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 OR5M3Q8NGP4 307 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 OR1J4Q8NGS1 313 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 OR52N1Q8NH53 320 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 KCNE4Q8WWG9 221 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 FGF11Q92914 225 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 PMEPA1Q969W9 287 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 C1GALT1C1Q96EU7 318 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 RNFT2Q96EX2 444 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 COQ7Q99807 217 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 PIGQQ9BRB3 760 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 LIN28AQ9H9Z2 209 aaKnown RBP7.22□□□□□ -1.25
VPS39-213ENST00000570062 MCCC2Q9HCC0 563 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 SH2D2AQ9NP31 389 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 FANCFQ9NPI8 374 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 PAK1IP1Q9NWT1 392 aaPredicted RBP7.22□□□□□ -1.25
VPS39-213ENST00000570062 GPR83Q9NYM4 423 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 STMN3Q9NZ72 180 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 FOXJ2Q9P0K8 574 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 B4GALT7Q9UBV7 327 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 BOKQ9UMX3 212 aaPredicted RBP7.22□□□□□ -1.25
VPS39-213ENST00000570062 CHCHD2Q9Y6H1 151 aaPredicted RBP7.22□□□□□ -1.25
VPS39-213ENST00000570062 RP1P56715 2156 aa7.22□□□□□ -1.25
VPS39-213ENST00000570062 TRAV27A0A087WT01 109 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 TEX51A0A1B0GUA7 166 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 LOC102725191A0A1B0GVB3 256 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 A0A1W2PRG6 482 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 BLOC1S5-TXNDC5H3BN57 136 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 CCRL2O00421 344 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 PHYHO14832 338 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 SLC30A4O14863 429 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 TM4SF5O14894 197 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 FZD7O75084 574 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 VAMP5O95183 116 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 NTN1O95631 604 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 BGLAPP02818 100 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 SCG5P05408 212 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 IGFBP1P08833 259 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 OR2T7P0C7T2 308 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 CNR1P21554 472 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 GALP22466 123 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 PSMA1P25786 263 aaKnown RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 C21orf33P30042 268 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 GSTT1P30711 240 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 SRD5A2P31213 254 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 UQCRC1P31930 480 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 PTGDSP41222 190 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 SERPINB10P48595 397 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 DAP3P51398 398 aaKnown RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 TAS2R43P59537 309 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 CTXN1P60606 82 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 BDH1Q02338 343 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 EGR4Q05215 589 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 ACSM1Q08AH1 577 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 MLLT11Q13015 90 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 GGTLC2Q14390 218 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 RTP5Q14D33 572 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 TRAM1Q15629 374 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 ZNF239Q16600 458 aaKnown RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 PLPPR5Q32ZL2 321 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 CNPY1Q3B7I2 92 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 DCAF10Q5QP82 559 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 GPR107Q5VW38 600 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 NIPAL3Q6P499 406 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 PLBD1Q6P4A8 553 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 DNM1P34Q6PK57 102 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 ISLR2Q6UXK2 745 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 H1FNTQ75WM6 255 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 KCTD20Q7Z5Y7 419 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 P2RY8Q86VZ1 359 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 CPOQ8IVL8 374 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 GTPBP8Q8N3Z3 284 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 KLHL36Q8N4N3 616 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 FAM98AQ8NCA5 519 aaKnown RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 OR52E2Q8NGJ4 325 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 OR52I1Q8NGK6 324 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 OR2T4Q8NH00 348 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 OR2T27Q8NH04 317 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 ADAMTS17Q8TE56 1095 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 TAAR8Q969N4 342 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 ISOC1Q96CN7 298 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 NTNG2Q96CW9 530 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 NXPE2Q96DL1 559 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 KTI12Q96EK9 354 aaPredicted RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 THOC3Q96J01 351 aaKnown RBP7.21□□□□□ -1.26
VPS39-213ENST00000570062 TEAD3Q99594 435 aa7.21□□□□□ -1.26
VPS39-213ENST00000570062 MGLLQ99685 303 aa7.21□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms