RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SGTBQ96EQ0 304 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 ZNF385AQ96PM9 386 aaKnown RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 MCCC2Q9HCC0 563 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 CHST11Q9NPF2 352 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 PAQR5Q9NXK6 330 aaPredicted RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 KLHL13Q9P2N7 655 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 REV1Q9UBZ9 1251 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 ZNF229Q9UJW7 825 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 CLEC4AQ9UMR7 237 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 SIGLEC7Q9Y286 467 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 HIF3AQ9Y2N7 669 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 MED31Q9Y3C7 131 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 SAMHD1Q9Y3Z3 626 aaKnown RBP8.26□□□□□ -1.09
VPS35-211ENST00000569950 FLVCR1Q9Y5Y0 555 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 CELSR2Q9HCU4 2923 aa8.26□□□□□ -1.09
VPS35-211ENST00000569950 TRAV27A0A087WT01 109 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 A0A1W2PNV4 684 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 HTR3EA5X5Y0 456 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 ARRDC5A6NEK1 342 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 EIF4E1BA6NMX2 242 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 ZNF724A8MTY0 619 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 E9PQ18 207 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 CCL21O00585 134 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 HNRNPRO43390 633 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 OR2T1O43869 369 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 EIF1BO60739 113 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 ZNF432O94892 652 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 STAMBPO95630 424 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 IGFBP1P08833 259 aaPredicted RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 PRKACGP22612 351 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 FPR3P25089 353 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 AGTR1P30556 359 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 DNAJA1P31689 397 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 RPL18Q07020 188 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 ZP4Q12836 540 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 MICAQ29983 383 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 OTUD3Q5T2D3 398 aaPredicted RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 SHQ1Q6PI26 577 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 H1FNTQ75WM6 255 aaPredicted RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 NUFIP2Q7Z417 695 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 ATCAYQ86WG3 371 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 TUSC5Q8IXB3 177 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 OR9K2Q8NGE7 335 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 OR8D4Q8NGM9 314 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 OR5J2Q8NH18 312 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 RNF217Q8TC41 542 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 ITLN2Q8WWU7 325 aaPredicted RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 INTS12Q96CB8 462 aaKnown RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 STARD4Q96DR4 205 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 TNFRSF13CQ96RJ3 184 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 NIPSNAP1Q9BPW8 284 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 DGCR6LQ9BY27 220 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 PLA2G12AQ9BZM1 189 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 GABARAPL1Q9H0R8 117 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 REEP1Q9H902 201 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 SELENONQ9NZV5 590 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 JKAMPQ9P055 326 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 STOML1Q9UBI4 398 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 NKX1-2Q9UD57 310 aaPredicted RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 TMEFF2Q9UIK5 374 aaPredicted RBP8.25□□□□□ -1.09
VPS35-211ENST00000569950 RNF6Q9Y252 685 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 B3GALT5Q9Y2C3 310 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 TACC2O95359 2948 aa8.25□□□□□ -1.09
VPS35-211ENST00000569950 RTTNQ86VV8 2226 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 MCIDASD6RGH6 385 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 J3QKU1 62 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 ZG16O60844 167 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 DEAF1O75398 565 aaPredicted RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 FASP25445 335 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 AQP2P41181 271 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 DAPP51397 102 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 SMIM11AP58511 58 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 PPP2R2BQ00005 443 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 TFF3Q07654 80 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 RASGEF1BQ0VAM2 473 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 TSPAN31Q12999 210 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 GK3PQ14409 553 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 PDSS1Q5T2R2 415 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 ZFP1Q6P2D0 407 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 CD300LDQ6UXZ3 194 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 CREB3L2Q70SY1 520 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 LINGO2Q7L985 606 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 MAMDC2Q7Z304 686 aaPredicted RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 FAM122BQ7Z309 247 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 BTLAQ7Z6A9 289 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 TMEM123Q8N131 208 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 OR10G2Q8NGC3 310 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 PIGXQ8TBF5 258 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 ZNF775Q96BV0 537 aaPredicted RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 NMD3Q96D46 503 aaKnown RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 NRBF2Q96F24 287 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 CENPNQ96H22 339 aaPredicted RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 GMPPAQ96IJ6 420 aaPredicted RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 TXNDC15Q96J42 360 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 FEVQ99581 238 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 TM9SF2Q99805 663 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 SF3B5Q9BWJ5 86 aaKnown RBP8.24□□□□□ -1.09
VPS35-211ENST00000569950 TAPBPLQ9BX59 468 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 KLHL4Q9C0H6 718 aa8.24□□□□□ -1.09
VPS35-211ENST00000569950 SEMA6AQ9H2E6 1030 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms