RNA–Protein interactions for RNA: ENST00000568676.5

HERPUD1-215, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 2

Gene HERPUD1, Length 571 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-215	ENST00000568676	LBP	P18428	481 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	GTF2E2	P29084	291 aa	Known RBP	13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ACAA2	P42765	397 aa	Known RBP	13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	DAG1	Q14118	895 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	LARS2	Q15031	903 aa	Known RBP	13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	C5orf46	Q6UWT4	87 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	RINL	Q6ZS11	566 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	LINGO2	Q7L985	606 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	GPR137C	Q8N3F9	429 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	CADM2	Q8N3J6	435 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SEMA6D	Q8NFY4	1073 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	OR52P1P	Q8NH57	321 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZNF418	Q8TF45	676 aa	Predicted RBP	13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SLC35B4	Q969S0	331 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ROPN1B	Q9BZX4	212 aa	Predicted RBP	13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ROPN1	Q9HAT0	212 aa	Predicted RBP	13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	CACYBP	Q9HB71	228 aa	Known RBP	13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	P2RX2	Q9UBL9	471 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZNF232	Q9UNY5	417 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	RAP2C	Q9Y3L5	183 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	GRIP1	Q9Y3R0	1128 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	DSPP	Q9NZW4	1301 aa		13.61	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TMEM229A	B2RXF0	380 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676		M0R233	179 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SYNGR3	O43761	229 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZNF432	O94892	652 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SERPINE1	P05121	402 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ADRA2A	P08913	450 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	NCF2	P19878	526 aa	Predicted RBP	13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ETV4	P43268	484 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	RPL14	P50914	215 aa	Known RBP	13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	CRISP3	P54108	245 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	CLDN17	P56750	224 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TUBA1B	P68363	451 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TUBA4A	P68366	448 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ARF1	P84077	181 aa	Known RBP	13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	IL1RL1	Q01638	556 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	LGALS3BP	Q08380	585 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SNTB2	Q13425	540 aa	Known RBP	13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	OGFOD2	Q6N063	350 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	USP43	Q70EL4	1123 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TUBA1A	Q71U36	451 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZNF781	Q8N8C0	355 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	PIK3C3	Q8NEB9	887 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	PPP1R36	Q96LQ0	422 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	DENND2D	Q9H6A0	471 aa	Predicted RBP	13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	METTL17	Q9H7H0	456 aa	Predicted RBP	13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	RLIM	Q9NVW2	624 aa		13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	THUMPD1	Q9NXG2	353 aa	Known RBP	13.6	□□□□□ -0.23
HERPUD1-215	ENST00000568676	LOC102725191	A0A1B0GVB3	256 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SH3PXD2B	A1X283	911 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZNF99	A8MXY4	864 aa	Predicted RBP	13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	FTCDNL1	E5RQL4	147 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	BIRC5	O15392	142 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	OR2T1	O43869	369 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TYROBP	O43914	113 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	FZD7	O75084	574 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	VENTX	O95231	258 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	GKN3P	P0CG01	181 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	PNMT	P11086	282 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ACHE	P22303	614 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	NR4A1	P22736	598 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ABCE1	P61221	599 aa	Known RBP	13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	RPS23	P62266	143 aa	Known RBP	13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	MRPS11	P82912	194 aa	Known RBP	13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	IFFO1	Q0D2I5	559 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	BNIP2	Q12982	314 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TRIP10	Q15642	601 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SHQ1	Q6PI26	577 aa	Known RBP	13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZNF836	Q6ZNA1	936 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZNF621	Q6ZSS3	439 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	CDK20	Q8IZL9	346 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	ZCCHC24	Q8N2G6	241 aa	Known RBP	13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	MRPL24	Q96A35	216 aa	Known RBP	13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TMEM186	Q96B77	213 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	OXGR1	Q96P68	337 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	OR52E6	Q96RD3	313 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	JMJD8	Q96S16	334 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	SEC61A2	Q9H9S3	476 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	NOX3	Q9HBY0	568 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	CRLF2	Q9HC73	371 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	GPR35	Q9HC97	309 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	REV1	Q9UBZ9	1251 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	IFT52	Q9Y366	437 aa		13.59	□□□□□ -0.23
HERPUD1-215	ENST00000568676	TMEM247	A6NEH6	219 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	WIPF1	O43516	503 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	MSMB	P08118	114 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	IGFBP1	P08833	259 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	CELA3B	P08861	270 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	GPR6	P46095	362 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	TMEM33	P57088	247 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	ACTG1	P63261	375 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	NPRL3	Q12980	569 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	C1D	Q13901	141 aa	Known RBP	13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	CCNI	Q14094	377 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	CEACAM16	Q2WEN9	425 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	NET1	Q7Z628	596 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	MYPOP	Q86VE0	399 aa	Predicted RBP	13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	SNX32	Q86XE0	403 aa		13.58	□□□□□ -0.24
HERPUD1-215	ENST00000568676	VRK2	Q86Y07	508 aa		13.58	□□□□□ -0.24

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