RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 PLSCR3Q9NRY6 295 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 IFT52Q9Y366 437 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 SBNO1A3KN83 1393 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 MSH6P52701 1360 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 PLEKHG2Q9H7P9 1386 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 SSH2Q76I76 1423 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 NCOA3Q9Y6Q9 1424 aa3.34□□□□□ -1.87
LINC00560-201ENST00000564593 ARHGAP23Q9P227 1491 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 TUBGCP6Q96RT7 1819 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 TRIM64CA6NLI5 447 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 IDSB3KWA1 339 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 HIP1O00291 1037 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 CAPN1P07384 714 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 GNA11P29992 359 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 HTR1FP30939 366 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 CALCRP30988 508 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 MAGEA8P43361 318 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 CEBPDP49716 269 aaPredicted RBP3.34□□□□□ -1.88
LINC00560-201ENST00000564593 PKNOX1P55347 436 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 MAJINQ3KP22 176 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 CEP55Q53EZ4 464 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 VRK2Q86Y07 508 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 MFSD9Q8NBP5 474 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 OR2AP1Q8NGE2 309 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 OR52I1Q8NGK6 324 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 TECTBQ96PL2 329 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 SLC38A2Q96QD8 506 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 ZBTB18Q99592 522 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 GON7Q9BXV9 100 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 TREM2Q9NZC2 230 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 COX16Q9P0S2 106 aa3.34□□□□□ -1.88
LINC00560-201ENST00000564593 PIK3C2AO00443 1686 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 IBTKQ9P2D0 1353 aaPredicted RBP3.33□□□□□ -1.88
LINC00560-201ENST00000564593 SIPA1L2Q9P2F8 1722 aaPredicted RBP3.33□□□□□ -1.88
LINC00560-201ENST00000564593 OVOS2A0A0G2JMS6 1433 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 CHD2O14647 1828 aaKnown RBP3.33□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF318Q5VUA4 2279 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 CEP170BQ9Y4F5 1589 aaPredicted RBP3.33□□□□□ -1.88
LINC00560-201ENST00000564593 LMO7Q8WWI1 1683 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 SYNJ2BP-COX16A0A087WUM0 186 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 A0A0G2JRQ6 117 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 A0A1B0GVY2 172 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 HELTA6NFD8 242 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 CXCL11O14625 94 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 TIMP1P01033 207 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 CD1EP15812 388 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 PTGDSP41222 190 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 HLCSP50747 726 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 KLRB1Q12918 225 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 SLC15A2Q16348 729 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 NSUN5P1Q3KNT7 163 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 DMRTC1Q5HYR2 192 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 EOGTQ5NDL2 527 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 C1orf220Q5T0J3 134 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 PDZK1Q5T2W1 519 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 GDPD3Q7L5L3 318 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 TGIF2LYQ8IUE0 185 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 LRRC75A-AS1Q8N1F1 130 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 SCFD1Q8WVM8 642 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 OR1E3Q8WZA6 343 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 UBE2E3Q969T4 207 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 PHYHIPLQ96FC7 376 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 SEC22AQ96IW7 307 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 CLCC1Q96S66 551 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 EBF4Q9BQW3 602 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 PARD6BQ9BYG5 372 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 ZDHHC11Q9H8X9 412 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 BTNL2Q9UIR0 455 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 ADAM28Q9UKQ2 775 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 UGT2A1Q9Y4X1 527 aa3.33□□□□□ -1.88
LINC00560-201ENST00000564593 RGPD8O14715 1765 aaPredicted RBP3.33□□□□□ -1.88
LINC00560-201ENST00000564593 ABCC6O95255 1503 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 PEAK1Q9H792 1746 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 KDM3BQ7LBC6 1761 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 KLLNB2CW77 178 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 DCTN6O00399 190 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 MED7O43513 233 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 PRKAB2O43741 272 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 SNAPINO95295 136 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF853P0CG23 659 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 GABRR1P24046 479 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 LYZP61626 148 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 CSNK1G2P78368 415 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 TNFRSF17Q02223 184 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 GRB7Q14451 532 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 ZMYND11Q15326 602 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 ZNF79Q15937 498 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 KLF17Q5JT82 389 aaPredicted RBP3.32□□□□□ -1.88
LINC00560-201ENST00000564593 FTMTQ8N4E7 242 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 OR2L5Q8NG80 312 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 LINC01006Q8NI28 216 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 TIMD4Q96H15 378 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 RNF2Q99496 336 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 COPS8Q99627 209 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 SLC39A3Q9BRY0 314 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 RBKSQ9H477 322 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 REEP4Q9H6H4 257 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 NHEJ1Q9H9Q4 299 aaPredicted RBP3.32□□□□□ -1.88
LINC00560-201ENST00000564593 ADAMTS13Q76LX8 1427 aa3.32□□□□□ -1.88
LINC00560-201ENST00000564593 UGT1A9O60656 530 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms