RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 PUDPQ08623 228 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 PDK3Q15120 406 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 RNPS1Q15287 305 aaKnown RBP18.43■□□□□ 0.54
CLN3-212ENST00000564574 OGFRL1Q5TC84 451 aaPredicted RBP18.43■□□□□ 0.54
CLN3-212ENST00000564574 KDM4DQ6B0I6 523 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 PPP4R4Q6NUP7 873 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 ZBTB49Q6ZSB9 765 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 P4HA3Q7Z4N8 544 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 FNDC9Q8TBE3 224 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 ROBO4Q8WZ75 1007 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 ENOPH1Q9UHY7 261 aa18.43■□□□□ 0.54
CLN3-212ENST00000564574 PHF3Q92576 2039 aaKnown RBP18.43■□□□□ 0.54
CLN3-212ENST00000564574 TRAV27A0A087WT01 109 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 LOC102725191A0A1B0GVB3 256 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 BLOC1S5-TXNDC5H3BN57 136 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 RCBTB2O95199 551 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 ADORA3P0DMS8 318 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 UQCRC1P31930 480 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 ALDH3A2P51648 485 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 POU4F3Q15319 338 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 TMEM225Q6GV28 225 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 ATCAYQ86WG3 371 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 CBR4Q8N4T8 237 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 PACRGLQ8N7B6 248 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 OR51A7Q8NH64 312 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 OXGR1Q96P68 337 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 TNFRSF13CQ96RJ3 184 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 TM9SF2Q99805 663 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 SMURF2Q9HAU4 748 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 GP6Q9HCN6 339 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 PAPOLBQ9NRJ5 636 aaKnown RBP18.42■□□□□ 0.54
CLN3-212ENST00000564574 GLRX2Q9NS18 164 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 KRT84Q9NSB2 600 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 TAS2R5Q9NYW4 299 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 KLHL9Q9P2J3 617 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 SEC14L4Q9UDX3 406 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 CDH10Q9Y6N8 788 aa18.42■□□□□ 0.54
CLN3-212ENST00000564574 SPENQ96T58 3664 aaKnown RBP18.42■□□□□ 0.54
CLN3-212ENST00000564574 IGHV3-15A0A0B4J1V0 119 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 MBD3L4A6NDZ8 208 aaPredicted RBP18.41■□□□□ 0.54
CLN3-212ENST00000564574 MBD3L3A6NE82 208 aaPredicted RBP18.41■□□□□ 0.54
CLN3-212ENST00000564574 MBD3L5A6NJ08 208 aaPredicted RBP18.41■□□□□ 0.54
CLN3-212ENST00000564574 ZNF814B7Z6K7 855 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 MS4A18H0YCH9 400 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 SOCS2O14508 198 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 EI24O14681 340 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 NDUFB2O95178 105 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 IGFBP5P24593 272 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 CA7P43166 264 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 SLC16A1P53985 500 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 RPL18Q07020 188 aaKnown RBP18.41■□□□□ 0.54
CLN3-212ENST00000564574 FHL1Q13642 323 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 MS4A18Q3C1V0 323 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 RTL6Q6ICC9 239 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 OR2A2Q6IF42 318 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 SMARCD3Q6STE5 483 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 KLHL17Q6TDP4 642 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 RPTNQ6XPR3 784 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 B3GNT6Q6ZMB0 384 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 ZNF620Q6ZNG0 422 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 PXKQ7Z7A4 578 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 CCDC103Q8IW40 242 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 MCEMP1Q8IX19 187 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 PARP8Q8N3A8 854 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 MBD3L2Q8NHZ7 208 aaPredicted RBP18.41■□□□□ 0.54
CLN3-212ENST00000564574 FANK1Q8TC84 345 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 TACO1Q9BSH4 297 aaKnown RBP18.41■□□□□ 0.54
CLN3-212ENST00000564574 RNF122Q9H9V4 155 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 MCCC2Q9HCC0 563 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 IL20Q9NYY1 176 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 FAM215AQ9Y5M1 114 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 ORC6Q9Y5N6 252 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 DOCK7Q96N67 2140 aa18.41■□□□□ 0.54
CLN3-212ENST00000564574 MED12LQ86YW9 2145 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 AQP8O94778 261 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 TGM6O95932 706 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 ALPLP05186 524 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 STSP08842 583 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 OSMP13725 252 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 KLK2P20151 261 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 PEX2P28328 305 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 AQP2P41181 271 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 RASGEF1BQ0VAM2 473 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 SLC17A1Q14916 467 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 EIF2S3LQ2VIR3 472 aaKnown RBP18.4■□□□□ 0.54
CLN3-212ENST00000564574 RFX4Q33E94 735 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 ALG10Q5BKT4 473 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 LPCAT4Q643R3 524 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 ANKRD34AQ69YU3 496 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 UEVLDQ8IX04 471 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 ANKK1Q8NFD2 765 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 MAGEE2Q8TD90 523 aaPredicted RBP18.4■□□□□ 0.54
CLN3-212ENST00000564574 ZFP3Q96NJ6 502 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 GPX7Q96SL4 187 aaPredicted RBP18.4■□□□□ 0.54
CLN3-212ENST00000564574 RASSF4Q9H2L5 321 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 OR52D1Q9H346 318 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 REV1Q9UBZ9 1251 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 TMEFF2Q9UIK5 374 aaPredicted RBP18.4■□□□□ 0.54
CLN3-212ENST00000564574 TINAGQ9UJW2 476 aa18.4■□□□□ 0.54
CLN3-212ENST00000564574 NOX1Q9Y5S8 564 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms