RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 CSF3P09919 207 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 CECR9P0C854 216 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 PNMTP11086 282 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 BMP4P12644 408 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 RPS5P46782 204 aaKnown RBP10.12□□□□□ -0.79
USP3-220ENST00000561381 POLR2JP52435 117 aaKnown RBP10.12□□□□□ -0.79
USP3-220ENST00000561381 NAAAQ02083 359 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 GGTLC2Q14390 218 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 ZNF311Q5JNZ3 666 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 C6orf10Q5SRN2 563 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 CYB5R2Q6BCY4 276 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 ANKRD16Q6P6B7 361 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 VHLLQ6RSH7 139 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 ABHD12BQ7Z5M8 362 aaPredicted RBP10.12□□□□□ -0.79
USP3-220ENST00000561381 MYPOPQ86VE0 399 aaPredicted RBP10.12□□□□□ -0.79
USP3-220ENST00000561381 COMTD1Q86VU5 262 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 STK35Q8TDR2 534 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 GTF2H4Q92759 462 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 PROX1Q92786 737 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 KTI12Q96EK9 354 aaPredicted RBP10.12□□□□□ -0.79
USP3-220ENST00000561381 ITCHQ96J02 903 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 PIF1Q9H611 641 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 RMND5AQ9H871 391 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 OBP2BQ9NPH6 170 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 CA10Q9NS85 328 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 ZIM2Q9NZV7 527 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 CDC42EP3Q9UKI2 254 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 ZNF232Q9UNY5 417 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 RASD1Q9Y272 281 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 PCDHB14Q9Y5E9 798 aa10.12□□□□□ -0.79
USP3-220ENST00000561381 IGHV4-61A0A0C4DH41 118 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 A0A0G2JPF8 293 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 SLC35F4A4IF30 521 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 HNRNPCL2B2RXH8 293 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 HNRNPCL3B7ZW38 293 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 SLCO1B7G3V0H7 640 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 UBDO15205 165 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 HNRNPCL1O60812 293 aaKnown RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 ZNF432O94892 652 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 VAMP5O95183 116 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 CELA3BP08861 270 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 OR4A8P0C604 315 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 HNRNPCL4P0DMR1 293 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 CALCRP30988 508 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 SERPINF1P36955 418 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 PDLIM4P50479 330 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 CLDN17P56750 224 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 UBE2NP61088 152 aaKnown RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 MAGOHP61326 146 aaKnown RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 SNRPD2P62316 118 aaKnown RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 ROR2Q01974 943 aaKnown RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 RGNQ15493 299 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 ADIPOQQ15848 244 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 CARTPTQ16568 116 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 TUSC1Q2TAM9 212 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 C1QTNF12Q5T7M4 302 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 SLC2A7Q6PXP3 512 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 IL17RELQ6ZVW7 336 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 C10orf111Q8N326 155 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 MFSD8Q8NHS3 518 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 TMEM158Q8WZ71 300 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 ZNF837Q96EG3 531 aaPredicted RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 FOXN4Q96NZ1 517 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 VRK1Q99986 396 aaPredicted RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 KCNS3Q9BQ31 491 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 KATNB1Q9BVA0 655 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 BEX2Q9BXY8 128 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 PAIP1Q9H074 479 aaKnown RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 B3GAT1Q9P2W7 334 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 CRNNQ9UBG3 495 aaPredicted RBP10.11□□□□□ -0.79
USP3-220ENST00000561381 IFT52Q9Y366 437 aa10.11□□□□□ -0.79
USP3-220ENST00000561381 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.1□□□□□ -0.791e-6■■■■□ 19.7
USP3-220ENST00000561381 MXRA5Q9NR99 2828 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 IGKV1D-42A0A075B6H8 117 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 A0A096LPI6 279 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 ARPC4-TTLL3A0A0A6YYG9 625 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 ZNF503-AS2A6NEH8 195 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 CLIC1O00299 241 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 LMX1BO60663 402 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 IGLV1-44P01699 117 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 CRYAAP02489 173 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 HOXB9P17482 250 aaPredicted RBP10.1□□□□□ -0.79
USP3-220ENST00000561381 CBLP22681 906 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 IGFBP5P24593 272 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 HTR2AP28223 471 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 NR4A2P43354 598 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 ARF1P84077 181 aaKnown RBP10.1□□□□□ -0.79
USP3-220ENST00000561381 SRSF2Q01130 221 aaKnown RBP10.1□□□□□ -0.79
USP3-220ENST00000561381 HGFACQ04756 655 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 ZSWIM7Q19AV6 140 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 MSANTD1Q6ZTZ1 278 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 SLC46A3Q7Z3Q1 461 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 MSRB3Q8IXL7 192 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 MIER2Q8N344 545 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 TAAR8Q969N4 342 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 LINC00470Q9BZP3 86 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 ARMC7Q9H6L4 198 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 CHODLQ9H9P2 273 aa10.1□□□□□ -0.79
USP3-220ENST00000561381 CACYBPQ9HB71 228 aaKnown RBP10.1□□□□□ -0.79
USP3-220ENST00000561381 BCL2L10Q9HD36 194 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms