RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 UBASH3BQ8TF42 649 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 SLC25A36Q96CQ1 311 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 TEX37Q96LM6 180 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 OXGR1Q96P68 337 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 ALKBH3Q96Q83 286 aaPredicted RBP7.96□□□□□ -1.14
HDDC3-204ENST00000559834 DOK1Q99704 481 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 SPATA9Q9BWV2 254 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 C20orf27Q9GZN8 174 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 DYNLRB1Q9NP97 96 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 AIG1Q9NVV5 245 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 HAO1Q9UJM8 370 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 RCE1Q9Y256 329 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 IFT52Q9Y366 437 aa7.96□□□□□ -1.14
HDDC3-204ENST00000559834 SH3PXD2BA1X283 911 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 LRP5LA4QPB2 252 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 TRPC5OSA6NMA1 111 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 TMEM229AB2RXF0 380 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 FRS3O43559 492 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 AKAP8O43823 692 aaKnown RBP7.95□□□□□ -1.14
HDDC3-204ENST00000559834 NPIPB7O75200 414 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 SLC22A3O75751 556 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 TACSTD2P09758 323 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 ZCCHC18P0CG32 403 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 IFNGR1P15260 489 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 APEX1P27695 318 aaKnown RBP7.95□□□□□ -1.14
HDDC3-204ENST00000559834 IL12AP29459 219 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 CALCRP30988 508 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 THBS4P35443 961 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 CDKN2CP42773 168 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 CLDN17P56750 224 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 TUBA1BP68363 451 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 TUBA4AP68366 448 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 ARF1P84077 181 aaKnown RBP7.95□□□□□ -1.14
HDDC3-204ENST00000559834 SRSF2Q01130 221 aaKnown RBP7.95□□□□□ -1.14
HDDC3-204ENST00000559834 HGFACQ04756 655 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 LGALS3BPQ08380 585 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 ADRM1Q16186 407 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 KRT71Q3SY84 523 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 RNF220Q5VTB9 566 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 C5orf46Q6UWT4 87 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 ZNF836Q6ZNA1 936 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 TUBA1AQ71U36 451 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 CLIP4Q8N3C7 705 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 PIK3C3Q8NEB9 887 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 SLC38A5Q8WUX1 472 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 SLC35B4Q969S0 331 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 SORT1Q99523 831 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 MS4A5Q9H3V2 200 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 RMND5AQ9H871 391 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 CRLF2Q9HC73 371 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 KCNK9Q9NPC2 374 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 PNPOQ9NVS9 261 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 RPS6KB2Q9UBS0 482 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 METRNQ9UJH8 293 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 USP22Q9UPT9 525 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 ZNF443Q9Y2A4 671 aaPredicted RBP7.95□□□□□ -1.14
HDDC3-204ENST00000559834 CMAHPQ9Y471 501 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 SPEF1Q9Y4P9 236 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 GPR45Q9Y5Y3 372 aa7.95□□□□□ -1.14
HDDC3-204ENST00000559834 A0A0A6YYJ9 748 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 LOC102725191A0A1B0GVB3 256 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 SLCO1B7G3V0H7 640 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 AIM2O14862 343 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 HDAC3O15379 428 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 LILRA1O75019 489 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 C1QCP02747 245 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 BCHEP06276 602 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 ALDOCP09972 364 aaKnown RBP7.94□□□□□ -1.14
HDDC3-204ENST00000559834 PNMTP11086 282 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 PRG2P13727 222 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 ETFAP13804 333 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 IDO1P14902 403 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 BGNP21810 368 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 RPS5P46782 204 aaKnown RBP7.94□□□□□ -1.14
HDDC3-204ENST00000559834 CAPZA2P47755 286 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 EVX1P49640 407 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 DSTNP60981 165 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 VSNL1P62760 191 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 POU3F1Q03052 451 aaPredicted RBP7.94□□□□□ -1.14
HDDC3-204ENST00000559834 NPRL3Q12980 569 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 DAG1Q14118 895 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 MAPK11Q15759 364 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 CEACAM16Q2WEN9 425 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 PDCD4Q53EL6 469 aaKnown RBP7.94□□□□□ -1.14
HDDC3-204ENST00000559834 ZNF311Q5JNZ3 666 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 ATG16L1Q676U5 607 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 H1FNTQ75WM6 255 aaPredicted RBP7.94□□□□□ -1.14
HDDC3-204ENST00000559834 LINGO2Q7L985 606 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 SNX32Q86XE0 403 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 KDM8Q8N371 416 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 SVOPLQ8N434 492 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 CKAP2Q8WWK9 683 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 PAIP2Q9BPZ3 127 aaKnown RBP7.94□□□□□ -1.14
HDDC3-204ENST00000559834 TPT1P8Q9HAU6 139 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 C12orf10Q9HB07 376 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 GPR35Q9HC97 309 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 NOX1Q9Y5S8 564 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 DSPPQ9NZW4 1301 aa7.94□□□□□ -1.14
HDDC3-204ENST00000559834 IGHV2OR16-5A0A0B4J2B6 119 aa7.93□□□□□ -1.14
HDDC3-204ENST00000559834 TMEM129A0AVI4 362 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms