RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 UFD1Q92890 307 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 KIAA1143Q96AT1 154 aaPredicted RBP2.48□□□□□ -2.01
TRAV28-201ENST00000557548 ZBED6CLQ96FA7 236 aaPredicted RBP2.48□□□□□ -2.01
TRAV28-201ENST00000557548 POM121L2Q96KW2 1035 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 TGS1Q96RS0 853 aaKnown RBP2.48□□□□□ -2.01
TRAV28-201ENST00000557548 CYTH2Q99418 400 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 MCRIP2Q9BUT9 160 aaKnown RBP2.48□□□□□ -2.01
TRAV28-201ENST00000557548 LRRC61Q9BV99 259 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 TEKT3Q9BXF9 490 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 ILKAPQ9H0C8 392 aaPredicted RBP2.48□□□□□ -2.01
TRAV28-201ENST00000557548 BLZF1Q9H2G9 400 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 RGCCQ9H4X1 137 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 HEXA-AS1Q9H8Q6 139 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 CYP3A43Q9HB55 503 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 MIEF1Q9NQG6 463 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 SDHAF3Q9NRP4 125 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 THUMPD1Q9NXG2 353 aaKnown RBP2.48□□□□□ -2.01
TRAV28-201ENST00000557548 AHSPQ9NZD4 102 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 DHRS4-AS1Q9P1J3 65 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 STYXL1Q9Y6J8 313 aa2.48□□□□□ -2.01
TRAV28-201ENST00000557548 TRAV25A0A0B4J276 109 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 A0A0J9YYE9 177 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 SMIM28A0A1B0GU29 152 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 A0A1B0GWB2 263 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 CYSRT1A8MQ03 144 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 C12orf71A8MTZ7 269 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 K7ENP7 123 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 CLOCKO15516 846 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF253O75346 499 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 OR7A10O76100 309 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 OR2F2O95006 317 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 GJB5O95377 273 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 C1orf105O95561 183 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 TGM6O95932 706 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 TRBC1P01850 177 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ERCC1P07992 297 aaPredicted RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ANXA5P08758 320 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 HOXD4P09016 255 aaPredicted RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 SLC35E2P0CK97 266 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 RBMY1CP0DJD4 496 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF24P17028 368 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF43P17038 809 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 TUBG1P23258 451 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 RRM2P31350 389 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 SPAM1P38567 509 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PTGDSP41222 190 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 NAMPTP43490 491 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 GSSP48637 474 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 RAB9AP51151 201 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 CCNHP51946 323 aaPredicted RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ATP12AP54707 1039 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 BIDP55957 195 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 YWHAGP61981 247 aaKnown RBP eCLIP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 BASP1P80723 227 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PAX8Q06710 450 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ELAVL2Q12926 359 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 OR5I1Q13606 314 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 SERTAD2Q14140 314 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 GNA13Q14344 377 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 STK38Q15208 465 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 USF2Q15853 346 aaPredicted RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 HNRNPA1L2Q32P51 320 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 GLYR1Q49A26 553 aaPredicted RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 VPS26BQ4G0F5 336 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 SLC22A6Q4U2R8 563 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 HIKESHIQ53FT3 197 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 EIPR1Q53HC9 387 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 FAM182AQ5T1J6 154 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 GPRC6AQ5T6X5 926 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 RUSC1-AS1Q66K80 236 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PTRHD1Q6GMV3 140 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF613Q6PF04 617 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 SASS6Q6UVJ0 657 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 HSDL2Q6YN16 418 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF600Q6ZNG1 722 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ASCL5Q7RTU5 278 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 VTCN1Q7Z7D3 282 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 Q8N377 158 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 SVOPLQ8N434 492 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 FBXL16Q8N461 479 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 RNF10Q8N5U6 811 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF565Q8N9K5 539 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ASCC1Q8N9N2 400 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 C9orf106Q8NAJ2 232 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 B3GNT7Q8NFL0 401 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PLPPR1Q8TBJ4 325 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 LKAAEAR1Q8TD35 194 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 CD300LFQ8TDQ1 290 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 TFB1MQ8WVM0 346 aaKnown RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PIBF1Q8WXW3 757 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 FGF11Q92914 225 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 CIDECQ96AQ7 238 aaPredicted RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 PRRC1Q96M27 445 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ZNF578Q96N58 590 aaPredicted RBP2.47□□□□□ -2.01
TRAV28-201ENST00000557548 OXGR1Q96P68 337 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 KCNA7Q96RP8 456 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 ELOVL4Q9GZR5 314 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 DNTTIP1Q9H147 329 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 NIPAL2Q9H841 368 aa2.47□□□□□ -2.01
TRAV28-201ENST00000557548 LY9Q9HBG7 655 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms