RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 KRT6AP02538 564 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 KRT6BP04259 564 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 APODP05090 189 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SERPINF2P08697 491 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 STAG3L3P0CL85 134 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 PNMA6AP0CW24 399 aaPredicted RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CCDC166P0CW27 439 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 HLA-EP13747 358 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 EZRP15311 586 aaKnown RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 M6PRP20645 277 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CSRP1P21291 193 aaKnown RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 RRM2P31350 389 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 GCKP35557 465 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 TNFRSF4P43489 277 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 KRT6CP48668 564 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CAMLGP49069 296 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CCT3P49368 545 aaKnown RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 RAB14P61106 215 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SNRPFP62306 86 aaKnown RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 EIF4EBP2Q13542 120 aaPredicted RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 DDX39BQ13838 428 aaKnown RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 LIPJQ5W064 366 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 PTRHD1Q6GMV3 140 aaKnown RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CASC4Q6P4E1 433 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 DEGS2Q6QHC5 323 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 ERN2Q76MJ5 926 aaKnown RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 UNC93AQ86WB7 457 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 LRRC6Q86X45 466 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 TUSC5Q8IXB3 177 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SYCE1Q8N0S2 351 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 TCAIMQ8N3R3 496 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF781Q8N8C0 355 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF680Q8NEM1 530 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 Q8NFD4 153 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 BEST4Q8NFU0 473 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 OR9A1PQ8NGU1 263 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 FLVCR1-AS1Q8TAF5 88 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF671Q8TAW3 534 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 VPS33AQ96AX1 596 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 PPP1R16AQ96I34 528 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 RANBP9Q96S59 729 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CIB1Q99828 191 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SELENOSQ9BQE4 189 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 MED10Q9BTT4 135 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 MLPHQ9BV36 600 aaPredicted RBP3.54□□□□□ -1.84
PRPF39-209ENST00000556353 CARD6Q9BX69 1037 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 BBS2Q9BXC9 721 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 DUSP16Q9BY84 665 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 FAM107BQ9H098 131 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 RIBC2Q9H4K1 309 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 NTN4Q9HB63 628 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 RAB9BQ9NP90 201 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 DNAJB9Q9UBS3 223 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SNX6Q9UNH7 406 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SH3GLB1Q9Y371 365 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 MYO9AB2RTY4 2548 aa3.54□□□□□ -1.84
PRPF39-209ENST00000556353 SDK2Q58EX2 2172 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ICE1Q9Y2F5 2266 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 LOC100506127A0A0U1RQW1 187 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 C5orf51A6NDU8 294 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ANXA2P2A6NMY6 339 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 YJEFN3A6XGL0 299 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 E7ENQ6 273 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 GOLGA8TH3BQL2 631 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 KMOO15229 486 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 RAD51BO15315 384 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 GMFGO60234 142 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 FCGR3BO75015 233 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 MYO1DO94832 1006 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 IGLV3-19P01714 112 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 IGLV3-27P01718 113 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 GLAP06280 429 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 PABPC4LP0CB38 370 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ZCCHC18P0CG32 403 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CMA1P23946 247 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 PSMA2P25787 234 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CD70P32970 193 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 RABIFP47224 123 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TPMTP51580 245 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CLDN6P56747 220 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ZNF33AQ06730 810 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ADIGQ0VDE8 80 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CDC20Q12834 499 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 IL24Q13007 206 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 PNOCQ13519 176 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ZMYND11Q15326 602 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 GOLGA7BQ2TAP0 167 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 KCTD21Q4G0X4 260 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 C2orf83Q53S99 150 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TTMPQ5BVD1 217 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 ARMCX4Q5H9R4 360 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 EOGTQ5NDL2 527 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 C10orf120Q5SQS8 335 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 SAPCD1Q5SSQ6 148 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 RIPPLY2Q5TAB7 128 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CLEC6AQ6EIG7 209 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TRMT10CQ7L0Y3 403 aaKnown RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 TPRA1Q86W33 373 aa3.53□□□□□ -1.84
PRPF39-209ENST00000556353 CDKL3Q8IVW4 592 aaPredicted RBP3.53□□□□□ -1.84
PRPF39-209ENST00000556353 NAXDQ8IW45 347 aa3.53□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms