RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 TAAR8Q969N4 342 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 OXGR1Q96P68 337 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 SLC17A5Q9NRA2 495 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 SELENONQ9NZV5 590 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 CADP27708 2225 aa14.09□□□□□ -0.15
CCDC88C-209ENST00000554872 RPL36A-HNRNPH2H7BZ11 118 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 CHP2O43745 196 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 CRYBA2P53672 197 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 FOXG1P55316 489 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 SH3BGRP55822 239 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 RPS4XP62701 263 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 GUCY1A3Q02108 690 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 REP15Q6BDI9 236 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 ERICH5Q6P6B1 374 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 H1FNTQ75WM6 255 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 WDR31Q8NA23 367 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 SMYD1Q8NB12 490 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 PCYOX1LQ8NBM8 494 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 KBTBD8Q8NFY9 601 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 MAGEE2Q8TD90 523 aaPredicted RBP14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 TAMM41Q96BW9 452 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 WFDC6Q9BQY6 131 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF426Q9BUY5 554 aa14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 MOV10Q9HCE1 1003 aaKnown RBP14.08□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF587BE7ETH6 402 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 M0R082 166 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 MRASO14807 208 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 CLOCKO15516 846 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 MT-ATP6P00846 226 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF43P17038 809 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 CD40P25942 277 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 GRPRP30550 384 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 MDH1P40925 334 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 SELENOPP49908 381 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 CDH12P55289 794 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 NPTX1Q15818 432 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 ETFDHQ16134 617 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 C3orf36Q3SXR2 165 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 BIVMQ86UB2 503 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 LSRQ86X29 649 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 OR6T1Q8NGN1 323 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 OR52N5Q8NH56 324 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF417Q8TAU3 575 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 SMAP2Q8WU79 429 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 C10orf82Q8WW14 230 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 C18orf12Q96KH6 178 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 ZNF587Q96SQ5 575 aaPredicted RBP14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 MCHR1Q99705 422 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 SLC19A3Q9BZV2 496 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 FAIMQ9NVQ4 179 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 MRPL39Q9NYK5 338 aaKnown RBP14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 CAPN7Q9Y6W3 813 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 ZFHX3Q15911 3703 aa14.07□□□□□ -0.16
CCDC88C-209ENST00000554872 ARPC4-TTLL3A0A0A6YYG9 625 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 M0R3H8 397 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 ABCD4O14678 606 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 TRAF3IP2O43734 574 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 AKAP8O43823 692 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 LYPD3O95274 346 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 BGLAPP02818 100 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 SOD3P08294 240 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 HOXB1P14653 301 aaPredicted RBP14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 PRPS1P60891 318 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 PGGHGQ32M88 737 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 MMEL1Q495T6 779 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 RABL3Q5HYI8 236 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 ALKBH2Q6NS38 261 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 YTHDF3Q7Z739 585 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 SNX32Q86XE0 403 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 FAM169BQ8N8A8 192 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 SLC25A36Q96CQ1 311 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 PERPQ96FX8 193 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 MPP4Q96JB8 637 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 COX4I2Q96KJ9 171 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 ECSITQ9BQ95 431 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 PRR14Q9BWN1 585 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 POLR2J2Q9GZM3 115 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 POLR2J3Q9H1A7 115 aaKnown RBP14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 GID8Q9NWU2 228 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 AP3M1Q9Y2T2 418 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 PLCE1Q9P212 2302 aa14.06□□□□□ -0.16
CCDC88C-209ENST00000554872 NIPBLQ6KC79 2804 aaeCLIP14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 TRAPPC13A5PLN9 417 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 FAM171A2A8MVW0 826 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 WNT11O96014 354 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 IGF2P01344 180 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 OPN1SWP03999 348 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 CDH11P55287 796 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 SLC25A3Q00325 362 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 LTBQ06643 244 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 ENTPD8Q5MY95 495 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 NIPAL3Q6P499 406 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 KLHL24Q6TFL4 600 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 NHLRC1Q6VVB1 395 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 ARPINQ7Z6K5 226 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 TMEM123Q8N131 208 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 OR1K1Q8NGR3 316 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 ADAMTS16Q8TE57 1224 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 NEUROG1Q92886 237 aa14.05□□□□□ -0.16
CCDC88C-209ENST00000554872 LRR1Q96L50 414 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms