RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 GLUD2P49448 558 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 NKX2-5P52952 324 aaPredicted RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 RIPK4P57078 832 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 SEC61A1P61619 476 aaKnown RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 MRPS22P82650 360 aaKnown RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 VLDLRP98155 873 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 C2orf80Q0P641 193 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 SCRN3Q0VDG4 424 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 SMARCB1Q12824 385 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 TMED2Q15363 201 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 UPP1Q16831 310 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 ZNF672Q499Z4 452 aaPredicted RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 TMEM52BQ4KMG9 183 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 FGD3Q5JSP0 725 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 PIK3CD-AS1Q5SR53 167 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 CTRB2Q6GPI1 263 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 ZNF836Q6ZNA1 936 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 SLC25A48Q6ZT89 311 aaKnown RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 COX15Q7KZN9 410 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 TAC4Q86UU9 113 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 ZNF547Q8IVP9 402 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 GID4Q8IVV7 300 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 CMTM1Q8IZ96 169 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 DCP1BQ8IZD4 617 aaKnown RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 HS3ST5Q8IZT8 346 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 TPRX1Q8N7U7 411 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 OR7A2PQ8NGA2 310 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 OR1J1Q8NGS3 322 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 OR6K2Q8NGY2 324 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 ACTL9Q8TC94 416 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 ACER1Q8TDN7 264 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 TADA1Q96BN2 335 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 CMTM5Q96DZ9 223 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 CENPNQ96H22 339 aaPredicted RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 ITCHQ96J02 903 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 CAPNS2Q96L46 248 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 CIB1Q99828 191 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 NEURL2Q9BR09 285 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 RAB34Q9BZG1 259 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 ELOVL4Q9GZR5 314 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 PORCNQ9H237 461 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 MAP6D1Q9H9H5 199 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 PATZ1Q9HBE1 687 aaKnown RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 RETNQ9HD89 108 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 HRASLSQ9HDD0 168 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 PPP1R3CQ9UQK1 317 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 SCML2Q9UQR0 700 aa5.43□□□□□ -1.54
VPS29-210ENST00000552130 EXOSC1Q9Y3B2 195 aaKnown RBP5.43□□□□□ -1.54
VPS29-210ENST00000552130 hDV102S1A0JD36 115 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 PP2D1A8MPX8 630 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 H3BNX3 289 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 PDHXO00330 501 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 SULT1C2O00338 296 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 EI24O14681 340 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 HMGN1P05114 100 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 COX5BP10606 129 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 EGR2P11161 476 aaPredicted RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 GM2AP17900 193 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 ZP3P21754 424 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 RANBP1P43487 201 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 ALDH3B2P48448 385 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 DNA2P51530 1060 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 PRELPP51888 382 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 XGP55808 180 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 BACE1P56817 501 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 OR1D5P58170 312 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 RPL27P61353 136 aaKnown RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 ERVS71-1P61550 626 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 POU3F1Q03052 451 aaPredicted RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 TRAF2Q12933 501 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 CYBRD1Q53TN4 286 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 LCE1AQ5T7P2 110 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 ZNF730Q6ZMV8 503 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 AHSA2Q719I0 299 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 SSX7Q7RTT5 188 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 TMEM25Q86YD3 366 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 APOBEC3FQ8IUX4 373 aaKnown RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 Q8N402 240 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 ZSCAN4Q8NAM6 433 aaPredicted RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 LINC00476Q8WZB0 136 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 NEIL2Q969S2 332 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 TMEM143Q96AN5 459 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 DGCR14Q96DF8 476 aaKnown RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 RITA1Q96K30 269 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 FGF20Q9NP95 211 aaPredicted RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 PLCXD1Q9NUJ7 323 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 UVRAGQ9P2Y5 699 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 GALPQ9UBC7 116 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 EIF3KQ9UBQ5 218 aaKnown RBP5.42□□□□□ -1.54
VPS29-210ENST00000552130 B4GALT7Q9UBV7 327 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 AMDHD2Q9Y303 409 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 OARD1Q9Y530 152 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 CACNG2Q9Y698 323 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 SYNJ2O15056 1496 aa5.42□□□□□ -1.54
VPS29-210ENST00000552130 ADGRL3Q9HAR2 1447 aa5.41□□□□□ -1.54
VPS29-210ENST00000552130 TAF1P21675 1872 aa5.41□□□□□ -1.54
VPS29-210ENST00000552130 TRBV5-3A0A0A0MS03 114 aa5.41□□□□□ -1.54
VPS29-210ENST00000552130 ZCWPW2A0A1B0GU75 182 aa5.41□□□□□ -1.54
VPS29-210ENST00000552130 ERVV-1B6SEH8 477 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms