RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 FAM69AQ5T7M9 428 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 C11orf71Q6IPW1 123 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 LINGO2Q7L985 606 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 DHDDSQ86SQ9 333 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 ARMC8Q8IUR7 673 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 HIPK4Q8NE63 616 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 OR1K1Q8NGR3 316 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 ZNF417Q8TAU3 575 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 HTRA1Q92743 480 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 SLC38A4Q969I6 547 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 ADAD1Q96M93 576 aaKnown RBP14.28□□□□□ -0.12
VPS29-207ENST00000549970 ZNF587Q96SQ5 575 aaPredicted RBP14.28□□□□□ -0.12
VPS29-207ENST00000549970 BARX1Q9HBU1 254 aaPredicted RBP14.28□□□□□ -0.12
VPS29-207ENST00000549970 NPHS2Q9NP85 383 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 ARGLU1Q9NWB6 273 aaPredicted RBP14.28□□□□□ -0.12
VPS29-207ENST00000549970 SELENONQ9NZV5 590 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 B3GAT1Q9P2W7 334 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 TESQ9UGI8 421 aaKnown RBP14.28□□□□□ -0.12
VPS29-207ENST00000549970 ANGPT4Q9Y264 503 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 NDUFAF1Q9Y375 327 aa14.28□□□□□ -0.12
VPS29-207ENST00000549970 CR1P17927 2039 aa14.27□□□□□ -0.12
VPS29-207ENST00000549970 IGKV1D-42A0A075B6H8 117 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 PRORSD1PA6NEY8 169 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 OR6C65A6NJZ3 312 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 AIM2O14862 343 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 ANGPT2O15123 496 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 OR2T1O43869 369 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 SERPINB7O75635 380 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 NUDT6P53370 316 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 MTPNP58546 118 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 KRTAP1-1Q07627 177 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 DMTNQ08495 405 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 C1DQ13901 141 aaKnown RBP14.27□□□□□ -0.13
VPS29-207ENST00000549970 SELPLGQ14242 412 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 OR1Q1Q15612 314 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 NRF1Q16656 503 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 CYP51A1Q16850 503 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 HMBOX1Q6NT76 420 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 ZNF544Q6NX49 715 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 ULK3Q6PHR2 472 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 C5orf46Q6UWT4 87 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 SMYD1Q8NB12 490 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 SLC47A1Q96FL8 570 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 OXGR1Q96P68 337 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 WFDC6Q9BQY6 131 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 ZNF385DQ9H6B1 395 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 VIPAS39Q9H9C1 493 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 TMEM27Q9HBJ8 222 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 TRIM33Q9UPN9 1127 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 MOKQ9UQ07 419 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 DNHD1Q96M86 4753 aa14.27□□□□□ -0.13
VPS29-207ENST00000549970 ABCA2Q9BZC7 2435 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 TRAV36DV7A0A075B6V5 113 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 A0A096LPE4 126 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 A0A0B4J2E0 115 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 A0A1B0GX12 115 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 A0A1W2PPZ6 126 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 TPST2O60704 377 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 UBE2NP61088 152 aaKnown RBP14.26□□□□□ -0.13
VPS29-207ENST00000549970 TUBA1BP68363 451 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 TUBA4AP68366 448 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 ROR2Q01974 943 aaKnown RBP14.26□□□□□ -0.13
VPS29-207ENST00000549970 C1QTNF12Q5T7M4 302 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 FAM91A1Q658Y4 838 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 DNM1P46Q6ZS02 220 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 TUBA1AQ71U36 451 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 RETREG3Q86VR2 466 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 PTOV1Q86YD1 416 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 BHLHE22Q8NFJ8 381 aaPredicted RBP14.26□□□□□ -0.13
VPS29-207ENST00000549970 STON2Q8WXE9 905 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 BCL2L2Q92843 193 aaPredicted RBP14.26□□□□□ -0.13
VPS29-207ENST00000549970 BOD1Q96IK1 185 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 ANKRD27Q96NW4 1050 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 CGREF1Q99674 301 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 LINC00470Q9BZP3 86 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 OBP2BQ9NPH6 170 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 KLHL14Q9P2G3 628 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 RCE1Q9Y256 329 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 JMJD1CQ15652 2540 aa14.26□□□□□ -0.13
VPS29-207ENST00000549970 ABCA1O95477 2261 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 A0A087WUJ7 227 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 IGHV1-18A0A0C4DH31 117 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 A0A0G2JND7 137 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 M0R3H8 397 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 EDF1O60869 148 aaKnown RBP14.25□□□□□ -0.13
VPS29-207ENST00000549970 FZD7O75084 574 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 SLC43A1O75387 559 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 ZNF432O94892 652 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 MFN2O95140 757 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 OPN1SWP03999 348 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 H2AFXP16104 143 aaPredicted RBP14.25□□□□□ -0.13
VPS29-207ENST00000549970 APOBEC3AP31941 199 aaPredicted RBP14.25□□□□□ -0.13
VPS29-207ENST00000549970 NFYCQ13952 458 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 RAB35Q15286 201 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 H1FNTQ75WM6 255 aaPredicted RBP14.25□□□□□ -0.13
VPS29-207ENST00000549970 NET1Q7Z628 596 aaPredicted RBP14.25□□□□□ -0.13
VPS29-207ENST00000549970 RANBP3LQ86VV4 465 aaPredicted RBP14.25□□□□□ -0.13
VPS29-207ENST00000549970 DPP10Q8N608 796 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 C11orf65Q8NCR3 313 aa14.25□□□□□ -0.13
VPS29-207ENST00000549970 SLC38A2Q96QD8 506 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms