RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 SEC61A2Q9H9S3 476 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 NOX3Q9HBY0 568 aa14.59□□□□□ -0.07
VPS29-204ENST00000548259 PPIHO43447 177 aaKnown RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 AKAP8O43823 692 aaKnown RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 UPK3AO75631 287 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 CELA3BP08861 270 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 GAAP10253 952 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 ZNF43P17038 809 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 NR4A1P22736 598 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 MRPS11P82912 194 aaKnown RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 FOXL1Q12952 345 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 SMU1Q2TAY7 513 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 TRMT5Q32P41 509 aaKnown RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 AWAT1Q58HT5 328 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 GKAP1Q5VSY0 366 aaPredicted RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 WBP2NLQ6ICG8 309 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 LRRC74BQ6ZQY2 392 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 PEX5LQ8IYB4 626 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 C17orf53Q8N3J3 647 aaPredicted RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 CADM2Q8N3J6 435 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 BPIFB2Q8N4F0 458 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 TRIML2Q8N7C3 387 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 MGARPQ8TDB4 240 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 C3orf30Q96M34 536 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 SLC35A5Q9BS91 424 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 CACYBPQ9HB71 228 aaKnown RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 ASIC5Q9NY37 505 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 TREM2Q9NZC2 230 aa14.58□□□□□ -0.08
VPS29-204ENST00000548259 ZNF346Q9UL40 294 aaKnown RBP14.58□□□□□ -0.08
VPS29-204ENST00000548259 A0A0G2JMP0 313 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 A0A0X1KG70 313 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 SMIM23A6NLE4 172 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 AHSA1O95433 338 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 GSNP06396 782 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 TFPTP0C1Z6 253 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 ALDH3A1P30838 453 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 LSP1P33241 339 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 GALK2Q01415 458 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 FUT5Q11128 374 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 C1DQ13901 141 aaKnown RBP14.57□□□□□ -0.08
VPS29-204ENST00000548259 PDLIM3Q53GG5 364 aaPredicted RBP14.57□□□□□ -0.08
VPS29-204ENST00000548259 ELFN2Q5R3F8 820 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 MRPL2Q5T653 305 aaKnown RBP14.57□□□□□ -0.08
VPS29-204ENST00000548259 C1orf140Q5VVS0 124 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 ACSM5Q6NUN0 579 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 LINGO2Q7L985 606 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 MDP1Q86V88 176 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 ANKRD46Q86W74 232 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 GSPT2Q8IYD1 628 aaKnown RBP14.57□□□□□ -0.08
VPS29-204ENST00000548259 C4orf33Q8N1A6 199 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 PIK3C3Q8NEB9 887 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 OR4M2Q8NGB6 313 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 ZIM3Q96PE6 472 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 ZNF747Q9BV97 191 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 RACGAP1Q9H0H5 632 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 NELFAQ9H3P2 528 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 ARMC7Q9H6L4 198 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 DDX28Q9NUL7 540 aaKnown RBP14.57□□□□□ -0.08
VPS29-204ENST00000548259 GPR160Q9UJ42 338 aa14.57□□□□□ -0.08
VPS29-204ENST00000548259 J3QLI3 93 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 FRS3O43559 492 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 ZNF432O94892 652 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 NR2F1P10589 423 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 NCF2P19878 526 aaPredicted RBP14.56□□□□□ -0.08
VPS29-204ENST00000548259 FPR2P25090 351 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 GLRXP35754 106 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 CLDN17P56750 224 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 PLAURQ03405 335 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 DPY19L1Q2PZI1 675 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 MMEL1Q495T6 779 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 TREML1Q86YW5 311 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 EPHX4Q8IUS5 362 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 RIBC1Q8N443 379 aaPredicted RBP14.56□□□□□ -0.08
VPS29-204ENST00000548259 MFSD8Q8NHS3 518 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 NANPQ8TBE9 248 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 STK35Q8TDR2 534 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 RAB39BQ96DA2 213 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 MRPL37Q9BZE1 423 aaKnown RBP14.56□□□□□ -0.08
VPS29-204ENST00000548259 SLC38A1Q9H2H9 487 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 ZNF385DQ9H6B1 395 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 NTN4Q9HB63 628 aa14.56□□□□□ -0.08
VPS29-204ENST00000548259 LOC105371242A0A075B767 164 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 TMEM229AB2RXF0 380 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 HMGN4O00479 90 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 TMPRSS2O15393 492 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 IGFBP1P08833 259 aaPredicted RBP14.55□□□□□ -0.08
VPS29-204ENST00000548259 TCN1P20061 433 aaPredicted RBP14.55□□□□□ -0.08
VPS29-204ENST00000548259 P2RY4P51582 365 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 CLNS1AP54105 237 aaKnown RBP14.55□□□□□ -0.08
VPS29-204ENST00000548259 SELENOVP59797 346 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 SYPL1Q16563 259 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 GSG1Q2KHT4 349 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 CEACAM16Q2WEN9 425 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 LIN52Q52LA3 116 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 RBMS3Q6XE24 437 aaKnown RBP14.55□□□□□ -0.08
VPS29-204ENST00000548259 C1QL2Q7Z5L3 287 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 MYPOPQ86VE0 399 aaPredicted RBP14.55□□□□□ -0.08
VPS29-204ENST00000548259 SNX32Q86XE0 403 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 RNF130Q86XS8 419 aa14.55□□□□□ -0.08
VPS29-204ENST00000548259 TESCQ96BS2 214 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms