RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 ZIK1Q3SY52 487 aaPredicted RBP8.55□□□□□ -1.04
YBX3-215ENST00000544504 TMEM176BQ3YBM2 270 aaPredicted RBP8.55□□□□□ -1.04
YBX3-215ENST00000544504 SLC36A3Q495N2 470 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 CMPK2Q5EBM0 449 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 SLC6A19Q695T7 634 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 SP5Q6BEB4 398 aaPredicted RBP8.55□□□□□ -1.04
YBX3-215ENST00000544504 KRT80Q6KB66 452 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 FAM180AQ6UWF9 173 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 CASP12Q6UXS9 341 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 TMPPEQ6ZT21 453 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 SLC46A3Q7Z3Q1 461 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 P3H2Q8IVL5 708 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 C8orf59Q8N0T1 100 aaPredicted RBP8.55□□□□□ -1.04
YBX3-215ENST00000544504 RBMXL3Q8N7X1 1067 aaKnown RBP8.55□□□□□ -1.04
YBX3-215ENST00000544504 ATP6V1C2Q8NEY4 427 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 OR2T33Q8NG76 320 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 OR5J2Q8NH18 312 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 ZNF524Q96C55 264 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 SLC25A36Q96CQ1 311 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 SNRNP40Q96DI7 357 aaKnown RBP8.55□□□□□ -1.04
YBX3-215ENST00000544504 KTI12Q96EK9 354 aaPredicted RBP8.55□□□□□ -1.04
YBX3-215ENST00000544504 SLC38A2Q96QD8 506 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 PITX2Q99697 317 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 MFRPQ9BY79 579 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 ANKRD60Q9BZ19 345 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 OR11A1Q9GZK7 315 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 OR52D1Q9H346 318 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 IMPAD1Q9NX62 359 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 SIGLEC7Q9Y286 467 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 HIF3AQ9Y2N7 669 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 CSAG2Q9Y5P2 127 aa8.55□□□□□ -1.04
YBX3-215ENST00000544504 ZC3H12DA2A288 527 aaKnown RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 NPIPB13A6NJU9 1138 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ZAR1LA6NP61 321 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 SHISA8B8ZZ34 492 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 NPIPB4C9JG80 1138 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 FTCDNL1E5RQL4 147 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 DLGAP1O14490 977 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 CDC42EP2O14613 210 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 IMPA2O14732 288 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 EFNA2O43921 213 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 MITFO75030 526 aaPredicted RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 VAMP5O95183 116 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 SOX14O95416 240 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 APEHP13798 732 aaKnown RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 PTNP21246 168 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 TCEA1P23193 301 aaKnown RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 MYF6P23409 242 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 GRPRP30550 384 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 UQCRC1P31930 480 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 GRK5P34947 590 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 SFTPDP35247 375 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 GGT2P36268 569 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 RPL4P36578 427 aaKnown RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 RFC3P40938 356 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 GIPRP48546 466 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 DIO1P49895 249 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 OR2B6P58173 313 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 RAC3P60763 192 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 LSM11P83369 360 aaKnown RBP eCLIP8.54□□□□□ -1.044e-8■□□□□ 8.6
YBX3-215ENST00000544504 CDK5Q00535 292 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ZP4Q12836 540 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 PMS2P3Q13401 168 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 SF3B4Q15427 424 aaKnown RBP eCLIP8.54□□□□□ -1.046e-21■■■■■ 30.4
YBX3-215ENST00000544504 OR7A5Q15622 319 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ZNF239Q16600 458 aaKnown RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 KRTCAP3Q53RY4 240 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 EMC4Q5J8M3 183 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 C6orf52Q5T4I8 152 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 SLX4IPQ5VYV7 408 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ANKRD34AQ69YU3 496 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 GPR139Q6DWJ6 353 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ARHGAP11AQ6P4F7 1023 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 PAQR6Q6TCH4 344 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 DPY19L2P2Q6ZN68 376 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 H1FNTQ75WM6 255 aaPredicted RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 CHMP1BQ7LBR1 199 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 HDDC2Q7Z4H3 204 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 PM20D2Q8IYS1 436 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 OR5M1Q8NGP8 315 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 OR13C2Q8NGS9 318 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 OR51A7Q8NH64 312 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 OR2V1Q8NHB1 315 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 NEIL3Q8TAT5 605 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 TRUB1Q8WWH5 349 aaKnown RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 SMPDL3BQ92485 455 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ABTB1Q969K4 478 aaPredicted RBP8.54□□□□□ -1.04
YBX3-215ENST00000544504 SARAFQ96BY9 339 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 PLEKHA8Q96JA3 519 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ZNF570Q96NI8 536 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 TNFRSF13CQ96RJ3 184 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 MBOAT4Q96T53 435 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 GPA33Q99795 319 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 PTDSS2Q9BVG9 487 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 TSSK6Q9BXA6 273 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 SLC6A15Q9H2J7 730 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 TMEM185BQ9H7F4 350 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 CHST11Q9NPF2 352 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 ASF1BQ9NVP2 202 aa8.54□□□□□ -1.04
YBX3-215ENST00000544504 NDRG4Q9ULP0 352 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms