RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 PTCHD1Q96NR3 888 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 LMAN2LQ9H0V9 348 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 NKX2-4Q9H2Z4 354 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 FBRSQ9HAH7 460 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 HCN3Q9P1Z3 774 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 FLVCR2Q9UPI3 526 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 MOKQ9UQ07 419 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 TICRRQ7Z2Z1 1910 aa12.57□□□□□ -0.4
VPS33A-208ENST00000543633 C5orf42Q9H799 3197 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 A0A087WUJ7 227 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 FAM221BA6H8Z2 402 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 EPOPA6NHQ4 379 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 NPIPB9F8W1W9 429 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 NARSO43776 548 aaKnown RBP12.56□□□□□ -0.4
VPS33A-208ENST00000543633 CTNSO60931 367 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 EGFP01133 1207 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 AK4P27144 223 aaPredicted RBP12.56□□□□□ -0.4
VPS33A-208ENST00000543633 SOX9P48436 509 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 HCCSP53701 268 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 DLX5P56178 289 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 RAB38P57729 211 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 PSMA6P60900 246 aaKnown RBP12.56□□□□□ -0.4
VPS33A-208ENST00000543633 Q499Y3 187 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 PRRT3Q5FWE3 981 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 KIRREL2Q6UWL6 708 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 FCRLAQ7L513 359 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 FAM220AQ7Z4H9 259 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF440Q8IYI8 595 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 CA13Q8N1Q1 262 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 DNAAF1Q8NEP3 725 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 C1orf216Q8TAB5 229 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 LHFPL5Q8TAF8 219 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 OIT3Q8WWZ8 545 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 FGF13Q92913 245 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 CLIP3Q96DZ5 547 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 ELMOD3Q96FG2 381 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 SFXN2Q96NB2 322 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 MNTQ99583 582 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 TTTY10Q9BZA0 68 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 POT1Q9NUX5 634 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 C2orf42Q9NWW7 574 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 RDH8Q9NYR8 311 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 TAS2R8Q9NYW2 309 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 OR5V1Q9UGF6 321 aa12.56□□□□□ -0.4
VPS33A-208ENST00000543633 TRBV5-5A0A0J9YX44 114 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 A6NCN8 305 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 SELENOFO60613 162 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 DNAJB6O75190 326 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ALDOBP05062 364 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ACSM4P0C7M7 580 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 NFYAP23511 347 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 RAD52P43351 418 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 TAS2R20P59543 309 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 HTR4Q13639 388 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 NFATC4Q14934 902 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 LINC00303Q3SY05 128 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 SLC16A9Q7RTY1 509 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 OVCH2Q7RTZ1 564 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 TMEM52Q8NDY8 209 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 OR52R1Q8NGF1 315 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 OR14C36Q8NHC7 312 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 RGP1Q92546 391 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ANKRD9Q96BM1 317 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 SEC22CQ9BRL7 303 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 REG4Q9BYZ8 158 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 BEX1Q9HBH7 125 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 TCF7L1Q9HCS4 588 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 TMEM74BQ9NUR3 256 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 EVA1BQ9NVM1 165 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 PPIEQ9UNP9 301 aaKnown RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 UBE2QL1A1L167 161 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 MFSD2BA6NFX1 497 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ACOD1A6NK06 481 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 MCRIP1C9JLW8 97 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 H0YGG7 62 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 IMPA2O14732 288 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ADAM11O75078 769 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 GLSO94925 669 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 EML2O95834 649 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 CXCL2P19875 107 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 RPL4P36578 427 aaKnown RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 PSMB10P40306 273 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 WASP42768 502 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ADPRHP54922 357 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ARF3P61204 181 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 PSG6Q00889 435 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 DBPQ10586 325 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF267Q14586 743 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 RBMS2Q15434 407 aaKnown RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 MPPED2Q15777 294 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 LINC01590Q5TEZ4 76 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 STAC2Q6ZMT1 411 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 LIPHQ8WWY8 451 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 OR1E3Q8WZA6 343 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 RNF166Q96A37 237 aaPredicted RBP12.55□□□□□ -0.4
VPS33A-208ENST00000543633 DPYSL5Q9BPU6 564 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 G6PC3Q9BUM1 346 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 SLC25A18Q9H1K4 315 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 RXFP3Q9NSD7 469 aa12.55□□□□□ -0.4
VPS33A-208ENST00000543633 ZNF69Q9UC07 566 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms