RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 ZBTB49Q6ZSB9 765 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 SEM1Q6ZVN7 128 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 MAMDC2Q7Z304 686 aaPredicted RBP9.42□□□□□ -0.9
VPS33A-204ENST00000540669 PM20D2Q8IYS1 436 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 MEIOBQ8N635 442 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 ST6GALNAC3Q8NDV1 305 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF845Q96IR2 970 aaPredicted RBP9.42□□□□□ -0.9
VPS33A-204ENST00000540669 UCK2Q9BZX2 261 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 GRIP2Q9C0E4 1043 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 ENKD1Q9H0I2 346 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 OR52D1Q9H346 318 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 RNF122Q9H9V4 155 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 GP6Q9HCN6 339 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 KRCC1Q9NPI7 259 aaPredicted RBP9.42□□□□□ -0.9
VPS33A-204ENST00000540669 NRIP3Q9NQ35 241 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 NANSQ9NR45 359 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 PAPOLBQ9NRJ5 636 aaKnown RBP9.42□□□□□ -0.9
VPS33A-204ENST00000540669 KLHL13Q9P2N7 655 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 TNFRSF10DQ9UBN6 386 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 FAM215AQ9Y5M1 114 aa9.42□□□□□ -0.9
VPS33A-204ENST00000540669 INTS1Q8N201 2190 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 DOPEY1Q5JWR5 2465 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 TRAV27A0A087WT01 109 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MBD3L4A6NDZ8 208 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MBD3L3A6NE82 208 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 UNC119BA6NIH7 251 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MBD3L5A6NJ08 208 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 CD8B2A6NJW9 211 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ZAR1LA6NP61 321 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 KDM4EB2RXH2 506 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MS4A18H0YCH9 400 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SULT2B1O00204 365 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 EIF1AYO14602 144 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ARPC3O15145 178 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SLC16A6O15403 523 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SEC14L5O43304 696 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 CXCL13O43927 109 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 PTGER4P35408 488 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ARHGDIAP52565 204 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MLLT10P55197 1068 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 CASP6P55212 293 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ESRRGP62508 458 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ADARB1P78563 741 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 EFNB1P98172 346 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 CDK5Q00535 292 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 RPL18Q07020 188 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 PUDPQ08623 228 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SLC17A1Q14916 467 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 OR7A5Q15622 319 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MS4A18Q3C1V0 323 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SLC36A3Q495N2 470 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ZBED5Q49AG3 693 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 GXYLT1Q4G148 440 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 OTUD3Q5T2D3 398 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 HBMQ6B0K9 141 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SMARCD3Q6STE5 483 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 USP51Q70EK9 711 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 H1FNTQ75WM6 255 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 NANOGNBQ7Z5D8 188 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 CCDC71Q8IV32 467 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 WDFY1Q8IWB7 410 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ZIC4Q8N9L1 334 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ATG16L2Q8NAA4 619 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 GALNT11Q8NCW6 608 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ANKK1Q8NFD2 765 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MOSPD2Q8NHP6 518 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 MBD3L2Q8NHZ7 208 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF519Q8TB69 540 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 FANK1Q8TC84 345 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 GTPBP3Q969Y2 492 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 NMD3Q96D46 503 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SF3B5Q9BWJ5 86 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 BCO1Q9HAY6 547 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 KRT84Q9NSB2 600 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 PNPLA3Q9NST1 481 aa9.41□□□□□ -0.9
VPS33A-204ENST00000540669 SMPD3Q9NY59 655 aaPredicted RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 NDRG4Q9ULP0 352 aaKnown RBP9.41□□□□□ -0.9
VPS33A-204ENST00000540669 CLCA1A8K7I4 914 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 MCIDASD6RGH6 385 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 WDR1O75083 606 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 AQP8O94778 261 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF432O94892 652 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 NDUFB2O95178 105 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 VAMP5O95183 116 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 OPN1LWP04000 364 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 IGFBP1P08833 259 aaPredicted RBP9.4□□□□□ -0.9
VPS33A-204ENST00000540669 SAGP10523 405 aaPredicted RBP9.4□□□□□ -0.9
VPS33A-204ENST00000540669 TFPIP10646 304 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 ENPP1P22413 925 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 PTGS2P35354 604 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 VHLP40337 213 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 AQP4P55087 323 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 PRPS1P60891 318 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 RPS3AP61247 264 aaKnown RBP9.4□□□□□ -0.9
VPS33A-204ENST00000540669 ZNF362Q5T0B9 420 aaPredicted RBP9.4□□□□□ -0.9
VPS33A-204ENST00000540669 ARMC4Q5T2S8 1044 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 SLX4IPQ5VYV7 408 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 NSUN5P2Q63ZY6 315 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 C12orf73Q69YU5 71 aa9.4□□□□□ -0.9
VPS33A-204ENST00000540669 PXKQ7Z7A4 578 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms