RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 NR2F1P10589 423 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ATP1B2P14415 290 aaPredicted RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 GABRA1P14867 456 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 EPCAMP16422 314 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MGMTP16455 207 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 HMGA1P17096 107 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 PVALBP20472 110 aaPredicted RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 HTR2AP28223 471 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 BTCP35070 178 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 FEN1P39748 380 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 NNMTP40261 264 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 RGRP47804 291 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MEOX2P50222 304 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 GPR143P51810 404 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 NR0B1P51843 470 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 PRKAG1P54619 331 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 LIM2P55344 173 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 CAV3P56539 151 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 TAS2R41P59536 307 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 PFN3P60673 137 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 POLR2LP62875 67 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 RAE1P78406 368 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 EFNB1P98172 346 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MC2RQ01718 297 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 TAF10Q12962 218 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 HTR4Q13639 388 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ETFDHQ16134 617 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 SLC36A2Q495M3 483 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 FAM209BQ5JX69 171 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ZNF626Q68DY1 528 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 FAM71E1Q6IPT2 247 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 AGTRAPQ6RW13 159 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 PAQR6Q6TCH4 344 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MBOAT1Q6ZNC8 495 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 CEACAM19Q7Z692 300 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ADCK2Q7Z695 626 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 KRT77Q7Z794 578 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 IQCHQ86VS3 1027 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 CLDN19Q8N6F1 224 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR4K1Q8NGD4 311 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR52L1Q8NGH7 329 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR5M9Q8NGP3 310 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR6K3Q8NGY3 331 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR5W2Q8NH69 310 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ZNF671Q8TAW3 534 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 SLC2A12Q8TD20 617 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 HAVCR2Q8TDQ0 301 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 C16orf78Q8WTQ4 265 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 SPRYD4Q8WW59 207 aaPredicted RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 RAB40AQ8WXH6 277 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 NSMAFQ92636 917 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 PNPLA2Q96AD5 504 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 TMEM159Q96B96 161 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MOAP1Q96BY2 351 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 S100A16Q96FQ6 103 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 LRRC46Q96FV0 321 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MED8Q96G25 268 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ZNF764Q96H86 408 aaPredicted RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 TMEM19Q96HH6 336 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 SENP5Q96HI0 755 aaPredicted RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 BOD1Q96IK1 185 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ZFP3Q96NJ6 502 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OR2A7Q96R45 310 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 BBS4Q96RK4 519 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 UTP23Q9BRU9 249 aaKnown RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 PINK1Q9BXM7 581 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 GSDMCQ9BYG8 508 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 CHIAQ9BZP6 476 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ARL6Q9H0F7 186 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 SLITRK2Q9H156 845 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ABCG8Q9H221 673 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 MCCC2Q9HCC0 563 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 NFKBIL1Q9UBC1 381 aaPredicted RBP6.04□□□□□ -1.44
USP28-202ENST00000535607 LHX3Q9UBR4 397 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 ZNF69Q9UC07 566 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 RASD1Q9Y272 281 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 OBSL1O75147 1896 aa6.04□□□□□ -1.44
USP28-202ENST00000535607 IGLV3-16A0A075B6K0 115 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 LOC102723971A0A1B0GUV8 181 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 KANTRA0A1W2PQU2 76 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 A0A1W2PS29 197 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SMIM30A4D0T7 59 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ZNF840PA6NDX5 716 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SLC9B1P1A6NJY1 282 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 AHRRA9YTQ3 701 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 DISC1C4P0D8 188 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 F5H5P2 479 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 DNASE2O00115 360 aaPredicted RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 WRBO00258 174 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SULT1C2O00338 296 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 SYT5O00445 386 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 IMPA2O14732 288 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 FFAR1O14842 300 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 PLPP2O43688 288 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 LCMT2O60294 686 aaKnown RBP6.03□□□□□ -1.44
USP28-202ENST00000535607 TSPAN3O60637 253 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 DNAJB6O75190 326 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 ZNF254O75437 659 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 TOXO94900 526 aa6.03□□□□□ -1.44
USP28-202ENST00000535607 CFDP00746 253 aaPredicted RBP6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms