RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 CHMP4BQ9H444 224 aaKnown RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 MTHFD2LQ9H903 347 aaPredicted RBP3.07□□□□□ -1.92
CD44-235ENST00000532339 HOMER3Q9NSC5 361 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 DDX19BQ9UMR2 479 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 PCM1Q15154 2024 aa3.07□□□□□ -1.92
CD44-235ENST00000532339 LYSTQ99698 3801 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 FRAS1Q86XX4 4008 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 MEX3AA1L020 520 aaKnown RBP3.06□□□□□ -1.92
CD44-235ENST00000532339 OR5H15A6NDH6 313 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 F8WDY8 70 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 C3orf84H3BNL1 204 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 CHEK1O14757 476 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 ARPC1BO15143 372 aaKnown RBP3.06□□□□□ -1.92
CD44-235ENST00000532339 GUCA1CO95843 209 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 IFNB1P01574 187 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 PCCBP05166 539 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 CCDC166P0CW27 439 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 PKLRP30613 574 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 MMP12P39900 470 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 ACTR1BP42025 376 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 ALDH3B1P43353 468 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 NUMBP49757 651 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 TKTL1P51854 596 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 GSCP56915 257 aaPredicted RBP3.06□□□□□ -1.92
CD44-235ENST00000532339 HSD17B7P56937 341 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 ACTR1AP61163 376 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 YWHAGP61981 247 aaKnown RBP eCLIP3.06□□□□□ -1.92
CD44-235ENST00000532339 VLDLRP98155 873 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 DPYSQ14117 519 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 CARTPTQ16568 116 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 FBXL19-AS1Q494R0 122 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 MS4A13Q5J8X5 152 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 LCE3EQ5T5B0 92 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 LIPJQ5W064 366 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 HIST2H2AA3Q6FI13 130 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 RTL6Q6ICC9 239 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 NEPROQ6NW34 567 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 SLC39A4Q6P5W5 647 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 CLEC20AQ6ZU45 233 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 TMEM26Q6ZUK4 368 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 YRDCQ86U90 279 aaKnown RBP3.06□□□□□ -1.92
CD44-235ENST00000532339 OR4N5Q8IXE1 308 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 RPRMLQ8N4K4 120 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 DCAF4L2Q8NA75 395 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 OR9Q2Q8NGE9 314 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 ERMNQ8TAM6 284 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 SLC2A14Q8TDB8 520 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 RXFP2Q8WXD0 754 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 TMEM45BQ96B21 275 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 CELF6Q96J87 481 aaKnown RBP3.06□□□□□ -1.92
CD44-235ENST00000532339 TBC1D10AQ9BXI6 508 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 PINK1Q9BXM7 581 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 TMEM231Q9H6L2 316 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 EML4Q9HC35 981 aaKnown RBP3.06□□□□□ -1.92
CD44-235ENST00000532339 POLE3Q9NRF9 147 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 PRR34Q9NV39 138 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 NUDT4Q9NZJ9 180 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 B4GALT7Q9UBV7 327 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 KLK11Q9UBX7 282 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 BLOC1S6Q9UL45 172 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 ATG4BQ9Y4P1 393 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 ALG6Q9Y672 507 aa3.06□□□□□ -1.92
CD44-235ENST00000532339 DOCK10Q96BY6 2186 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 MPDZO75970 2070 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 IGHV3-20A0A0C4DH32 117 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 YJEFN3A6XGL0 299 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 K7EQD1 137 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 SOCS3O14543 225 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 LANCL1O43813 399 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 ALOX12BO75342 701 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 IGLV3-27P01718 113 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 HEXBP07686 556 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 LYNP07948 512 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CCDC130P13994 396 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 MMP11P24347 488 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CALRP27797 417 aaKnown RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 TRIM23P36406 574 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 ACAA2P42765 397 aaKnown RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 GNPDA1P46926 289 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 SLC6A8P48029 635 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 TNNC1P63316 161 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 GABPB1Q06547 395 aaPredicted RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 SNX1Q13596 522 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 RFTN2Q52LD8 501 aaPredicted RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 AGKQ53H12 422 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 LDLRAP1Q5SW96 308 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 LIPKQ5VXJ0 399 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CYB5R2Q6BCY4 276 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 ZNF343Q6P1L6 599 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 C22orf39Q6P5X5 142 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CCBE1Q6UXH8 406 aaPredicted RBP3.05□□□□□ -1.92
CD44-235ENST00000532339 ZNF730Q6ZMV8 503 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 Q6ZRG5 221 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 GPRIN3Q6ZVF9 776 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CHMP1BQ7LBR1 199 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 ZER1Q7Z7L7 766 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 Q8N377 158 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 FAM71CQ8NEG0 241 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 GOLGA5Q8TBA6 731 aa3.05□□□□□ -1.92
CD44-235ENST00000532339 CCDC110Q8TBZ0 833 aa3.05□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms