RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 ARL6IP1Q15041 203 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 PRAMEF20Q5VT98 475 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 ZNF530Q6P9A1 599 aaPredicted RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 TMEM107Q6UX40 140 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 KDM7AQ6ZMT4 941 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 C17orf82Q86X59 251 aaPredicted RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 CATSPER1Q8NEC5 780 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 ST8SIA1Q92185 356 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 FGGYQ96C11 551 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 TRIM62Q9BVG3 475 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 FAM192AQ9GZU8 254 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 ANKRD19PQ9H560 264 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 KLHL28Q9NXS3 571 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 RPS6KB2Q9UBS0 482 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 RPL36Q9Y3U8 105 aaKnown RBP3.13□□□□□ -1.91
CD44-223ENST00000526553 IQSEC2Q5JU85 1478 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 MAGI2Q86UL8 1455 aa3.13□□□□□ -1.91
CD44-223ENST00000526553 CLTCQ00610 1675 aaKnown RBP3.12□□□□□ -1.91
CD44-223ENST00000526553 A0A1B0GUS0 222 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 FAM231BA6NCW3 169 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 WWP2O00308 870 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 UGT1A9O60656 530 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 SLITRK3O94933 977 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 TNNI1P19237 187 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 UGT1A3P35503 534 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 OPRD1P41143 372 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 PTGDSP41222 190 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 TPMTP51580 245 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 PRRX1P54821 245 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 DIO3P55073 304 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 GBE1Q04446 702 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 CCDC173Q0VFZ6 552 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 VGLL4Q14135 290 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 GNMTQ14749 295 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 LRRC36Q1X8D7 754 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 DMRTC1Q5HYR2 192 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 OR2B11Q5JQS5 317 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 RAET1LQ5VY80 246 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 OTPQ5XKR4 325 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 WDR74Q6RFH5 385 aaPredicted RBP3.12□□□□□ -1.91
CD44-223ENST00000526553 ENPP6Q6UWR7 440 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 NUDCD3Q8IVD9 361 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 SKA3Q8IX90 412 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 OR4C5Q8NGB2 326 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 ZNF641Q96N77 438 aaPredicted RBP3.12□□□□□ -1.91
CD44-223ENST00000526553 RNF2Q99496 336 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 CHIAQ9BZP6 476 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 ILKAPQ9H0C8 392 aaPredicted RBP3.12□□□□□ -1.91
CD44-223ENST00000526553 EHD1Q9H4M9 534 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 EXO5Q9H790 373 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 NMRAL1Q9HBL8 299 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 SH3TC1Q8TE82 1336 aa3.12□□□□□ -1.91
CD44-223ENST00000526553 NCOA1Q15788 1441 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 TRAPPC8Q9Y2L5 1435 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 NUP153P49790 1475 aaKnown RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 ARHGAP5Q13017 1502 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 CDK13Q14004 1512 aaKnown RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 IGHV7-81A0A0B4J1V7 117 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 TCRBV9S1A1TA0A576 114 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 TCP11X1B4DZS4 312 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 KIF2AO00139 706 aaPredicted RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 HIP1O00291 1037 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 PRB2P02812 416 aaPredicted RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 CCDC166P0CW27 439 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 IGLL1P15814 213 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 VDAC1P21796 283 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 NTSP30990 170 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 ATP5OP48047 213 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 SLC26A2P50443 739 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 CKAP4Q07065 602 aaKnown RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 GK3PQ14409 553 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 ZNF77Q15935 545 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 AANATQ16613 207 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 XKR7Q5GH72 579 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 SPANXN2Q5MJ10 180 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 SAMD4BQ5PRF9 694 aaKnown RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 RNASEKQ6P5S7 137 aaKnown RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 HSDL2Q6YN16 418 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 FRA10AC1Q70Z53 315 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 ARCQ7LC44 396 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 OR9A1PQ8NGU1 263 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 OR56B4Q8NH76 319 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 PAQR8Q8TEZ7 354 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 RAPGEF5Q92565 580 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 UFD1Q92890 307 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 STMN2Q93045 179 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 MCUR1Q96AQ8 359 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 SLC25A38Q96DW6 304 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 ZNF799Q96GE5 643 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 TSNARE1Q96NA8 513 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 CNN2Q99439 309 aaKnown RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 CHP1Q99653 195 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 RIOK1Q9BRS2 568 aaKnown RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 MTG1Q9BT17 334 aaPredicted RBP3.11□□□□□ -1.91
CD44-223ENST00000526553 RBKSQ9H477 322 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 NEK6Q9HC98 313 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 SAMD9Q5K651 1589 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 TTC21BQ7Z4L5 1316 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 ABCA6Q8N139 1617 aa3.11□□□□□ -1.91
CD44-223ENST00000526553 POLR1AO95602 1720 aaPredicted RBP3.1□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms