RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TREX2Q9BQ50 279 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 EBF4Q9BQW3 602 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 REEP4Q9H6H4 257 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 AKTIPQ9H8T0 292 aa7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 CCM2LQ9NUG4 571 aaPredicted RBP7.21□□□□□ -1.26
LIMCH1-219ENST00000514096 PINLYPA6NC86 204 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC31A2O15432 143 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 SSX4O60224 188 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 TRIM3O75382 744 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 EIF3GO75821 320 aaKnown RBP eCLIP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 ANXA7P20073 488 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 ERP29P30040 261 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF763Q0D2J5 394 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 BATFQ16520 125 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 FAM174BQ3ZCQ3 159 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 TMEM35AQ53FP2 167 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 RNFT1Q5M7Z0 435 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 WIPI1Q5MNZ9 446 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 PLAG1Q6DJT9 500 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC25A25Q6KCM7 469 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 LARP4Q71RC2 724 aaKnown RBP eCLIP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 C9orf40Q8IXQ3 194 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 APCDD1LQ8NCL9 501 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 OR52H1Q8NGJ2 320 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 RAB2BQ8WUD1 216 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 LRTOMTQ8WZ04 291 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 GTF3AQ92664 365 aaKnown RBP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 UFD1Q92890 307 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 LINC00052Q96N35 136 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 CLMPQ9H6B4 373 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 LOC390937A0A1W2PQ73 354 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 TCRBV16S1A1N1A0A5B0 115 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 MFSD2BA6NFX1 497 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 SERPINE1P05121 402 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 HOXD4P09016 255 aaPredicted RBP7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 RFPL3SP0C7P2 107 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 SDC1P18827 310 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 MST1P26927 711 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 SFTPDP35247 375 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 ALDH3B2P48448 385 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 NRG3P56975 720 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 APOFQ13790 326 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 QPRTQ15274 297 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 TBCCQ15814 346 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 EXT1Q16394 746 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 PRSS53Q2L4Q9 553 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 CD163Q86VB7 1156 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 LAS2Q8IYD9 372 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF619Q8N2I2 560 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 L3MBTL4Q8NA19 623 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 OR7G2Q8NG99 324 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 OR14L1PQ8NHC6 308 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 NT5CQ8TCD5 201 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 SFT2D1Q8WV19 159 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 IMMP1LQ96LU5 166 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 OR1F2PQ96R84 312 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 RERGLQ9H628 205 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 FOLH1BQ9HBA9 442 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 ERVK13-1Q9NX77 482 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 MED11Q9P086 117 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 ANAPC2Q9UJX6 822 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 MKLN1Q9UL63 735 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 LRBAP50851 2863 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 CSMD2Q7Z408 3487 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 F8P00451 2351 aa7.2□□□□□ -1.26
LIMCH1-219ENST00000514096 GXYLT2A0PJZ3 443 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 OR2AT4A6NND4 320 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 NR5A2O00482 541 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 TOXO94900 526 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 LAP3P28838 519 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 RPL14P50914 215 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 UFM1P61960 85 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 EXOC3L2Q2M3D2 409 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF674Q2M3X9 581 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 HFEQ30201 348 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 SLC9B1Q4ZJI4 515 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF385BQ569K4 471 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 SPANXN4Q5MJ08 99 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 THEM4Q5T1C6 240 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 CPTPQ5TA50 214 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 YOD1Q5VVQ6 348 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 RAET1LQ5VY80 246 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 ANKRD34AQ69YU3 496 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 IGF2-ASQ6U949 168 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 CLEC9AQ6UXN8 241 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 ZNF431Q8TF32 576 aaPredicted RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 FBXL20Q96IG2 436 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 CLUHP3Q96NS8 147 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 OR52B2Q96RD2 323 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 ESRP2Q9H6T0 727 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 METTL8Q9H825 291 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 DEPPQ9NTK1 212 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 FBXO34Q9NWN3 711 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 MCUBQ9NWR8 336 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 PPIEQ9UNP9 301 aaKnown RBP7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 CAMK2AQ9UQM7 478 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 C1orf226A1L170 272 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 MYO1GB0I1T2 1018 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 EEF1E1-BLOC1S5C9J1V9 151 aa7.19□□□□□ -1.26
LIMCH1-219ENST00000514096 EEF1E1O43324 174 aaKnown RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms