RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 SLC43A2Q8N370 569 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 CLIP4Q8N3C7 705 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 NATD1Q8N6N6 113 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 NOA1Q8NC60 698 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 ZNF540Q8NDQ6 660 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 FAM83FQ8NEG4 500 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 OR14L1PQ8NHC6 308 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HUS1BQ8NHY5 278 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 FAM76AQ8TAV0 307 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HSD17B8Q92506 261 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 CCT6BQ92526 530 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HTRA1Q92743 480 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 PROX1Q92786 737 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 HGDQ93099 445 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 C11orf24Q96F05 449 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 MS4A14Q96JA4 679 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 TSNARE1Q96NA8 513 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 COL21A1Q96P44 957 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ZNF317Q96PQ6 595 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 DUX5Q96PT3 197 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GAL3ST4Q96RP7 486 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 CSF3RQ99062 836 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 MAPKAP1Q9BPZ7 522 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 RBM4Q9BWF3 364 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 ERVK-6Q9BXR3 956 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 DDX47Q9H0S4 455 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 SPNS1Q9H2V7 528 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 METTL17Q9H7H0 456 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 PPANQ9NQ55 473 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 TIGARQ9NQ88 270 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 G6PC2Q9NQR9 355 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GIMAP4Q9NUV9 329 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 FAM120CQ9NX05 1096 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 TEX10Q9NXF1 929 aaPredicted RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 TAS2R10Q9NYW0 307 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 TAS2R9Q9NYW1 312 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 TAS2R7Q9NYW3 318 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 GRHL1Q9NZI5 618 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ZNF639Q9UID6 485 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 MCTS1Q9ULC4 181 aaKnown RBP3.42□□□□□ -1.86
USP54-217ENST00000498213 SNX12Q9UMY4 172 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 CAMK2AQ9UQM7 478 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ERVK-19Q9WJR5 959 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ASB4Q9Y574 426 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 ZNF780BQ9Y6R6 833 aa3.42□□□□□ -1.86
USP54-217ENST00000498213 IGHV4-28A0A0C4DH34 117 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 A0A0G2JMM0 328 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 A0A1W2PPB8 328 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 A0A1W2PRS3 328 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 WASHC1A8K0Z3 465 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 KIR3DP1A8MWS1 328 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 PLOD2O00469 737 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ICOSLGO75144 302 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 SS18L1O75177 396 aaPredicted RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 SEC31AO94979 1220 aaKnown RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 CLDN9O95484 217 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 OTCP00480 354 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CGAP01215 116 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 SOD3P08294 240 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 RBP1P09455 135 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CSF1P09603 554 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 DAOP14920 347 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CD1DP15813 335 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 PTNP21246 168 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CNTFP26441 200 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 MPIP34949 423 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 BSGP35613 385 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 RPL3P39023 403 aaKnown RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 KCNJ1P48048 391 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 XKP51811 444 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 HNRNPFP52597 415 aaKnown RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 MAPK12P53778 367 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 TERF1P54274 439 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CLDN18P56856 261 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 TAS2R39P59534 338 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 MRPS25P82663 173 aaKnown RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 FAM27E3Q08E93 113 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 C17orf67Q0P5P2 114 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 PLCXD2Q0VAA5 305 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 CALCOCO2Q13137 446 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 TSNQ15631 228 aaKnown RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 FAM189A2Q15884 450 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 PRICKLE4Q2TBC4 344 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ZNF628Q5EBL2 1059 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 PRAMEF20Q5VT98 475 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ANKRD22Q5VYY1 191 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 FRG2Q64ET8 278 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ZNF544Q6NX49 715 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 SLC48A1Q6P1K1 146 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ZCCHC12Q6PEW1 402 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ANGPTL8Q6UXH0 198 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 RAPH1Q70E73 1250 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 IKBIPQ70UQ0 350 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 C16orf82Q7Z2V1 217 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 ZNF550Q7Z398 422 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 P4HA3Q7Z4N8 544 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 MTERF4Q7Z6M4 381 aaKnown RBP3.41□□□□□ -1.86
USP54-217ENST00000498213 ISCA2Q86U28 154 aa3.41□□□□□ -1.86
USP54-217ENST00000498213 FADS6Q8N9I5 356 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms