RNA–Protein interactions for RNA: ENST00000496347.1

HDAC4-213, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 995 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-213ENST00000496347 DMTNQ08495 405 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 KRTAP21-3Q3LHN1 58 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 INTS11Q5TA45 600 aaKnown RBP13.79□□□□□ -0.2
HDAC4-213ENST00000496347 PATL1Q86TB9 770 aaKnown RBP13.79□□□□□ -0.2
HDAC4-213ENST00000496347 EPHX4Q8IUS5 362 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 SCAIQ8N9R8 606 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 WDR31Q8NA23 367 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 ANKK1Q8NFD2 765 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 NEUROG1Q92886 237 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 SLC25A36Q96CQ1 311 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 TRMT61AQ96FX7 289 aaKnown RBP13.79□□□□□ -0.2
HDAC4-213ENST00000496347 LINC00470Q9BZP3 86 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 GSX1Q9H4S2 264 aaPredicted RBP13.79□□□□□ -0.2
HDAC4-213ENST00000496347 TMEM27Q9HBJ8 222 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 FGFR1OP2Q9NVK5 253 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 CISD1Q9NZ45 108 aaKnown RBP13.79□□□□□ -0.2
HDAC4-213ENST00000496347 B3GAT1Q9P2W7 334 aa13.79□□□□□ -0.2
HDAC4-213ENST00000496347 JMJD1CQ15652 2540 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 LOC102725191A0A1B0GVB3 256 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 TRIM64A6NGJ6 449 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 TRIM64BA6NI03 449 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 M0R082 166 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 ZNF43P17038 809 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 SELENOPP49908 381 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 PRPS1P60891 318 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 SPOCK1Q08629 439 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 SELPLGQ14242 412 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 OR1Q1Q15612 314 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 C9orf135Q5VTT2 229 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 NIPAL3Q6P499 406 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 ZNF613Q6PF04 617 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 SLC22A25Q6T423 547 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 CLEC9AQ6UXN8 241 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 DEPDC4Q8N2C3 294 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 PIAS4Q8N2W9 510 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-213ENST00000496347 OR8J3Q8NGG0 315 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 ZNF417Q8TAU3 575 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 POM121Q96HA1 1249 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 OXGR1Q96P68 337 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 ZNF587Q96SQ5 575 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-213ENST00000496347 ARHGDIGQ99819 225 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 TMEM43Q9BTV4 400 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 TRAF4Q9BUZ4 470 aaPredicted RBP13.78□□□□□ -0.2
HDAC4-213ENST00000496347 POU2F3Q9UKI9 436 aa13.78□□□□□ -0.2
HDAC4-213ENST00000496347 A0A1W2PR80 420 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 M0R1B8 84 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 ZNF432O94892 652 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 VIMP08670 466 aaKnown RBP13.77□□□□□ -0.21
HDAC4-213ENST00000496347 GRPRP30550 384 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 SLC25A3Q00325 362 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 CYLC2Q14093 348 aaPredicted RBP13.77□□□□□ -0.21
HDAC4-213ENST00000496347 MAPRE2Q15555 327 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 NRF1Q16656 503 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 AGAP6Q5VW22 663 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 ZNF544Q6NX49 715 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 H1FNTQ75WM6 255 aaPredicted RBP13.77□□□□□ -0.21
HDAC4-213ENST00000496347 SMYD1Q8NB12 490 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 OR1K1Q8NGR3 316 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 RASSF5Q8WWW0 418 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 TAAR8Q969N4 342 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 SLC41A3Q96GZ6 507 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 SH3GL1Q99961 368 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 DHRS9Q9BPW9 319 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 CCDC134Q9H6E4 229 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 FKRPQ9H9S5 495 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 BARX1Q9HBU1 254 aaPredicted RBP13.77□□□□□ -0.21
HDAC4-213ENST00000496347 ZNF446Q9NWS9 450 aa13.77□□□□□ -0.21
HDAC4-213ENST00000496347 SONP18583 2426 aaKnown RBP13.76□□□□□ -0.21
HDAC4-213ENST00000496347 ALPK2Q86TB3 2170 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 ARPC4-TTLL3A0A0A6YYG9 625 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 M0R3H8 397 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 FXYD1O00168 92 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 FBP2O00757 339 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 TRAF3IP2O43734 574 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-213ENST00000496347 CHP2O43745 196 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 SLC43A1O75387 559 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 LGI1O95970 557 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 MT-ATP6P00846 226 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 NPPAP01160 153 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 OPN1SWP03999 348 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 CDH12P55289 794 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 CLDN17P56750 224 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 C1DQ13901 141 aaKnown RBP13.76□□□□□ -0.21
HDAC4-213ENST00000496347 TBRG1Q3YBR2 411 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 HIKESHIQ53FT3 197 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 HSP90B2PQ58FF3 399 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 HMBOX1Q6NT76 420 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 CIARTQ8N365 385 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-213ENST00000496347 OR10A6Q8NH74 314 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 MAGEE2Q8TD90 523 aaPredicted RBP13.76□□□□□ -0.21
HDAC4-213ENST00000496347 SMR3AQ99954 134 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 ASPNQ9BXN1 380 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 PCDHAC1Q9H158 963 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 SEC14L4Q9UDX3 406 aa13.76□□□□□ -0.21
HDAC4-213ENST00000496347 RPL36A-HNRNPH2H7BZ11 118 aa13.75□□□□□ -0.21
HDAC4-213ENST00000496347 SLC22A2O15244 555 aa13.75□□□□□ -0.21
HDAC4-213ENST00000496347 TPST2O60704 377 aa13.75□□□□□ -0.21
HDAC4-213ENST00000496347 CD8AP01732 235 aa13.75□□□□□ -0.21
HDAC4-213ENST00000496347 NQO1P15559 274 aaKnown RBP13.75□□□□□ -0.21
HDAC4-213ENST00000496347 CDH2P19022 906 aaPredicted RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms