RNA–Protein interactions for RNA: ENST00000495327.1

RBM28-208, Transcript of RNA binding motif protein 28, human

TSL 2

Gene RBM28, Length 395 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM28-208	ENST00000495327	HEATR1	Q9H583	2144 aa	Known RBP	11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	LOC102725191	A0A1B0GVB3	256 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327		M0R082	166 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	CLOCK	O15516	846 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	ARHGEF9	O43307	516 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	ZNF43	P17038	809 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	GRPR	P30550	384 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	SELENOP	P49908	381 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	CDH12	P55289	794 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	ZNF672	Q499Z4	452 aa	Predicted RBP	11.71	□□□□□ -0.53
RBM28-208	ENST00000495327		Q5PR19	223 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	PRSS57	Q6UWY2	283 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	TMEM108	Q6UXF1	575 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	LINC00114	Q6XXX2	140 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	SCAI	Q8N9R8	606 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	KBTBD8	Q8NFY9	601 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	OR52N5	Q8NH56	324 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	ZNF417	Q8TAU3	575 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	SLC26A7	Q8TE54	656 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	TMEM171	Q8WVE6	324 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	SLC41A3	Q96GZ6	507 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	RADIL	Q96JH8	1075 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	OXGR1	Q96P68	337 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	ZNF587	Q96SQ5	575 aa	Predicted RBP	11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	ECSIT	Q9BQ95	431 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	LINC00470	Q9BZP3	86 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	CXorf56	Q9H5V9	222 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	SLC17A5	Q9NRA2	495 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	SEC14L4	Q9UDX3	406 aa		11.71	□□□□□ -0.53
RBM28-208	ENST00000495327	SETD2	Q9BYW2	2564 aa	Predicted RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	FAM220BP	B1ANY3	271 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	SHISA9	B4DS77	424 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ZNF587B	E7ETH6	402 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ABCD4	O14678	606 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	TRAF3IP2	O43734	574 aa	Predicted RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	AKAP8	O43823	692 aa	Known RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ZNF432	O94892	652 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	BGLAP	P02818	100 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	DANCR	P0C864	163 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	FOSL1	P15407	271 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	PTAFR	P25105	342 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	PTH2R	P49190	550 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ENTPD8	Q5MY95	495 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	NIPAL3	Q6P499	406 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	KLHL17	Q6TDP4	642 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	H1FNT	Q75WM6	255 aa	Predicted RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	P3H2	Q8IVL5	708 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	OR4D11	Q8NGI4	311 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	RP9	Q8TA86	221 aa	Known RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	RNF217	Q8TC41	542 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ADAMTS16	Q8TE57	1224 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ZNF583	Q96ND8	569 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ALKBH3	Q96Q83	286 aa	Predicted RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ZNF426	Q9BUY5	554 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ZNF701	Q9NV72	531 aa	Predicted RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	MRPL39	Q9NYK5	338 aa	Known RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	ARMCX1	Q9P291	453 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	MGAT4B	Q9UQ53	548 aa		11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	MAGED1	Q9Y5V3	778 aa	Predicted RBP	11.7	□□□□□ -0.54
RBM28-208	ENST00000495327	C2CD3	Q4AC94	2353 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	LOC100653049	A0A140TA62	436 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	TRAPPC13	A5PLN9	417 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	CPSF4L	A6NMK7	179 aa	Known RBP	11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	RPL36A-HNRNPH2	H7BZ11	118 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	CCDC22	O60826	627 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	KRT34	O76011	436 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	LYPD3	O95274	346 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	MT-ATP6	P00846	226 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	CDH11	P55287	796 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	SH3BGR	P55822	239 aa	Predicted RBP	11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	CLDN17	P56750	224 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	RPS4X	P62701	263 aa	Known RBP	11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	SLC25A3	Q00325	362 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	C9orf135	Q5VTT2	229 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	ARPIN	Q7Z6K5	226 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	RBM45	Q8IUH3	476 aa	Known RBP	11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	KDM8	Q8N371	416 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	WDR31	Q8NA23	367 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	ANKK1	Q8NFD2	765 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	VANGL1	Q8TAA9	524 aa	Predicted RBP	11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	RCN3	Q96D15	328 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	PERP	Q96FX8	193 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	MPP4	Q96JB8	637 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	ASPN	Q9BXN1	380 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	POLR2J2	Q9GZM3	115 aa	Known RBP	11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	POLR2J3	Q9H1A7	115 aa	Known RBP	11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	OBP2B	Q9NPH6	170 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	BAG5	Q9UL15	447 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	AP3M1	Q9Y2T2	418 aa		11.69	□□□□□ -0.54
RBM28-208	ENST00000495327	NIPBL	Q6KC79	2804 aa	eCLIP	11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	ZAN	Q9Y493	2812 aa		11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	NSD1	Q96L73	2696 aa	Predicted RBP	11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	SLC43A1	O75387	559 aa		11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	KRT33A	O76009	404 aa		11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	WNT11	O96014	354 aa		11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	THY1	P04216	161 aa		11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	NQO1	P15559	274 aa	Known RBP	11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	PAX7	P23759	505 aa		11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	CD40	P25942	277 aa		11.68	□□□□□ -0.54
RBM28-208	ENST00000495327	RIPPLY3	P57055	190 aa		11.68	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms