RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 LAMP3Q9UQV4 416 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 RCE1Q9Y256 329 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 B3GALT5Q9Y2C3 310 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 CORINQ9Y5Q5 1042 aa13.26□□□□□ -0.29
USP39-217ENST00000491659 MAGED1Q9Y5V3 778 aaPredicted RBP13.26□□□□□ -0.29
USP39-217ENST00000491659 FLNAP21333 2647 aaKnown RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 M0R1B8 84 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 CHP2O43745 196 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 TPST2O60704 377 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 NQO1P15559 274 aaKnown RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 CDH2P19022 906 aaPredicted RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 CD247P20963 164 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 CBLP22681 906 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 PTAFRP25105 342 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 GZMMP51124 257 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 CDH12P55289 794 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 CLDN17P56750 224 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 C1DQ13901 141 aaKnown RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 C1QTNF12Q5T7M4 302 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 ERICH5Q6P6B1 374 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 PRSS57Q6UWY2 283 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 H1FNTQ75WM6 255 aaPredicted RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 YTHDF3Q7Z739 585 aaKnown RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 PIAS4Q8N2W9 510 aaPredicted RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 KDM8Q8N371 416 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 C10orf53Q8N6V4 93 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 ADPRHL1Q8NDY3 354 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 GPR32P1Q8NGA4 272 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 OR6T1Q8NGN1 323 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 OR6S1Q8NH40 331 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 LILRB1Q8NHL6 650 aaPredicted RBP13.25□□□□□ -0.29
USP39-217ENST00000491659 C10orf82Q8WW14 230 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 IGFBPL1Q8WX77 278 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 NEUROG1Q92886 237 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 TAMM41Q96BW9 452 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 RADILQ96JH8 1075 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 WFDC6Q9BQY6 131 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 TMEM43Q9BTV4 400 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 ASPNQ9BXN1 380 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 DLL4Q9NR61 685 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 SLC17A5Q9NRA2 495 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 FAIMQ9NVQ4 179 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 SEC14L4Q9UDX3 406 aa13.25□□□□□ -0.29
USP39-217ENST00000491659 LOC100653049A0A140TA62 436 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 CPSF4LA6NMK7 179 aaKnown RBP13.24□□□□□ -0.29
USP39-217ENST00000491659 SLC43A1O75387 559 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 KRT34O76011 436 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 WNT11O96014 354 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 PAX1P15863 534 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 PTNP21246 168 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 PRPS1P60891 318 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 NPTX1Q15818 432 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 ENTPD8Q5MY95 495 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 HMBOX1Q6NT76 420 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 CCDC80Q76M96 950 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 CALHM3Q86XJ0 350 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 UEVLDQ8IX04 471 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 DEPDC4Q8N2C3 294 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 SCAIQ8N9R8 606 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 SMAP2Q8WU79 429 aaPredicted RBP13.24□□□□□ -0.29
USP39-217ENST00000491659 PROX1Q92786 737 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 Q96MF0 132 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 LINC00470Q9BZP3 86 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 CISD1Q9NZ45 108 aaKnown RBP13.24□□□□□ -0.29
USP39-217ENST00000491659 B3GAT1Q9P2W7 334 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 POU2F3Q9UKI9 436 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 ROS1P08922 2347 aa13.24□□□□□ -0.29
USP39-217ENST00000491659 MAP1AP78559 2803 aaPredicted RBP13.24□□□□□ -0.29
USP39-217ENST00000491659 ARID1AO14497 2285 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 FAM220BPB1ANY3 271 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 SHISA9B4DS77 424 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 IFNA14P01570 189 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 BGLAPP02818 100 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 DANCRP0C864 163 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 CD40P25942 277 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 SH3BGRP55822 239 aaPredicted RBP13.23□□□□□ -0.29
USP39-217ENST00000491659 ATP5J2P56134 94 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 VEZF1Q14119 521 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 HIKESHIQ53FT3 197 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 SLC22A25Q6T423 547 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 GPR137CQ8N3F9 429 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 WDR31Q8NA23 367 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 OR1K1Q8NGR3 316 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 ADAMTS16Q8TE57 1224 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 GTPBP3Q969Y2 492 aaKnown RBP13.23□□□□□ -0.29
USP39-217ENST00000491659 C18orf12Q96KH6 178 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 ZNF317Q96PQ6 595 aaPredicted RBP13.23□□□□□ -0.29
USP39-217ENST00000491659 ALG2Q9H553 416 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 OBP2BQ9NPH6 170 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 ZNF701Q9NV72 531 aaPredicted RBP13.23□□□□□ -0.29
USP39-217ENST00000491659 ARMCX1Q9P291 453 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 BAG5Q9UL15 447 aa13.23□□□□□ -0.29
USP39-217ENST00000491659 LOC102725191A0A1B0GVB3 256 aa13.22□□□□□ -0.29
USP39-217ENST00000491659 TRAPPC13A5PLN9 417 aa13.22□□□□□ -0.29
USP39-217ENST00000491659 TRAF3IP2O43734 574 aaPredicted RBP13.22□□□□□ -0.29
USP39-217ENST00000491659 CCDC22O60826 627 aa13.22□□□□□ -0.29
USP39-217ENST00000491659 UPK3AO75631 287 aa13.22□□□□□ -0.29
USP39-217ENST00000491659 MT-ATP6P00846 226 aa13.22□□□□□ -0.29
USP39-217ENST00000491659 SOD3P08294 240 aa13.22□□□□□ -0.29
USP39-217ENST00000491659 UBE2NP61088 152 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms