RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 THRSPQ92748 146 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 TIMD4Q96H15 378 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 HIST1H4GQ99525 98 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 MRPL45Q9BRJ2 306 aaKnown RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 SELENOIQ9C0D9 397 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 ZDHHC4Q9NPG8 344 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 SMPD3Q9NY59 655 aaPredicted RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 RNF14Q9UBS8 474 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 SH3BGRL2Q9UJC5 107 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 RPH3ALQ9UNE2 315 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 MRPS33Q9Y291 106 aaKnown RBP1.31□□□□□ -2.2
SMC4-220ENST00000488017 TIMM10BQ9Y5J6 103 aa1.31□□□□□ -2.2
SMC4-220ENST00000488017 RBMY1BA6NDE4 496 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 RBMY1EA6NEQ0 496 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 K7EQM0 130 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 UGT1A9O60656 530 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 NOL3O60936 208 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 ATP5LO75964 103 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 AP2A1O95782 977 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 RETP07949 1114 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 RBMY1DP0C7P1 496 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 RBMY1A1P0DJD3 496 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 ICAM2P13598 275 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 NCK1P16333 377 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 DESP17661 470 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 FMO3P31513 532 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 OTX2P32243 289 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 RFC4P35249 363 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 DDOSTP39656 456 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 MAP3K8P41279 467 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 CASP4P49662 377 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 GPM6AP51674 278 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 CRISP3P54108 245 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 PKNOX1P55347 436 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 REG3AQ06141 175 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 PSG5Q15238 335 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 LINC00483Q53H64 154 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 CARD16Q5EG05 197 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 DMRTC1Q5HYR2 192 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 TMEM255AQ5JRV8 349 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 BEND3Q5T5X7 828 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 Q6ZN92 141 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 ZNF621Q6ZSS3 439 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 GDPD3Q7L5L3 318 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 VSTM4Q8IW00 320 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 ZNF683Q8IZ20 524 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 NPBQ8NG41 125 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 OR10G3Q8NGC4 313 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 OR52H1Q8NGJ2 320 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 GIMAP1Q8WWP7 306 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 SYAP1Q96A49 352 aaPredicted RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 SEC22AQ96IW7 307 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 CEP170P1Q96L14 293 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 FCRL1Q96LA6 429 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 SENP8Q96LD8 212 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 OXGR1Q96P68 337 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 ZNF607Q96SK3 696 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 RNF2Q99496 336 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 P2RY13Q9BPV8 354 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 RIOK1Q9BRS2 568 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 ERP44Q9BS26 406 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 HDHD3Q9BSH5 251 aaPredicted RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 TUBGCP2Q9BSJ2 902 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 ACTR6Q9GZN1 396 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 ROGDIQ9GZN7 287 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 LRRN3Q9H3W5 708 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 RBKSQ9H477 322 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 THUMPD1Q9NXG2 353 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 DEC1Q9P2X7 70 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 SEC14L3Q9UDX4 400 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 PTBP2Q9UKA9 531 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 ISY1Q9ULR0 285 aaKnown RBP1.3□□□□□ -2.2
SMC4-220ENST00000488017 SNX6Q9UNH7 406 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 TRAPPC4Q9Y296 219 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 POLDIP2Q9Y2S7 368 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 WIF1Q9Y5W5 379 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 MAP3K15Q6ZN16 1313 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 PNPLA6Q8IY17 1366 aa1.3□□□□□ -2.2
SMC4-220ENST00000488017 PHF3Q92576 2039 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 A0A0G2JN53 185 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 IQANK1A0A1B0GTG1 560 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 TCRBV9S1A1TA0A576 114 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 MBLAC1A4D2B0 266 aaPredicted RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 C11orf94C9JXX5 98 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 F5H6K3 240 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 AGPAT2O15120 278 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 ANGPT2O15123 496 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 ARPC3O15145 178 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 BET1O15155 118 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 B4GALT2O60909 372 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 DIRAS1O95057 198 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 OXSR1O95747 527 aaPredicted RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 KLK3P07288 261 aaPredicted RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 MRPL3P09001 348 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 ZNF286BP0CG31 522 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 CCDC130P13994 396 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 GNA11P29992 359 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 GLP1RP43220 463 aa1.29□□□□□ -2.2
SMC4-220ENST00000488017 QARSP47897 775 aaKnown RBP1.29□□□□□ -2.2
SMC4-220ENST00000488017 ARRB1P49407 418 aaPredicted RBP1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms