RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 VWFP04275 2813 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 LOC105371242A0A075B767 164 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 SMIM23A6NLE4 172 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 TRIM77I1YAP6 450 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 SEC14L2O76054 403 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 VAMP5O95183 116 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 CPSF4O95639 269 aaKnown RBP13.18□□□□□ -0.3
MCF2L-228ENST00000487354 TFP02787 698 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 GKN3PP0CG01 181 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 NR4A1P22736 598 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 GPR6P46095 362 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-228ENST00000487354 SEC24CP53992 1094 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 NPRL3Q12980 569 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 CASP8Q14790 479 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 PDLIM3Q53GG5 364 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-228ENST00000487354 PHYHD1Q5SRE7 291 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 C1orf140Q5VVS0 124 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 PRAMEF8Q5VWM4 474 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 PRAMEF7Q5VXH5 474 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 TMEM225Q6GV28 225 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 LRP11Q86VZ4 500 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 RNF130Q86XS8 419 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 HOMEZQ8IX15 550 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 KDM8Q8N371 416 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 ZDHHC22Q8N966 263 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 ANKK1Q8NFD2 765 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 MS4A3Q96HJ5 214 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 SLC35A5Q9BS91 424 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 GPR35Q9HC97 309 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF275Q9NSD4 429 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-228ENST00000487354 B3GNT2Q9NY97 397 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 NOP53Q9NZM5 478 aaKnown RBP13.18□□□□□ -0.3
MCF2L-228ENST00000487354 MARCOQ9UEW3 520 aaPredicted RBP13.18□□□□□ -0.3
MCF2L-228ENST00000487354 GRIP1Q9Y3R0 1128 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 CHST2Q9Y4C5 530 aa13.18□□□□□ -0.3
MCF2L-228ENST00000487354 DSPPQ9NZW4 1301 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 PRSS51A0A1B0GVH4 220 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 CDHR4A6H8M9 788 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 A8MVM7 634 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 SYNGR3O43761 229 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 PNPP00491 289 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 PNMTP11086 282 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF35P13682 527 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 PRG2P13727 222 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 ACHEP22303 614 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 ARR3P36575 388 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 ALDH3B1P43353 468 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 EVX1P49640 407 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 HPCAP84074 193 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 EGR4Q05215 589 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 MAD2L1BPQ15013 274 aaPredicted RBP13.17□□□□□ -0.3
MCF2L-228ENST00000487354 GSTA3Q16772 222 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 SLC9B1Q4ZJI4 515 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 SPANXN4Q5MJ08 99 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF836Q6ZNA1 936 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 LRRC74BQ6ZQY2 392 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 TMEM123Q8N131 208 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 OR51F2Q8NH61 342 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 TMPRSS13Q9BYE2 586 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF696Q9H7X3 374 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 CRLF2Q9HC73 371 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF224Q9NZL3 707 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 REV1Q9UBZ9 1251 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 RCE1Q9Y256 329 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 RASD1Q9Y272 281 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 CMAHPQ9Y471 501 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 PCDHGB1Q9Y5G3 927 aa13.17□□□□□ -0.3
MCF2L-228ENST00000487354 M0R233 179 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 TFPTP0C1Z6 253 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF14P17017 642 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-228ENST00000487354 TCN1P20061 433 aaPredicted RBP13.16□□□□□ -0.3
MCF2L-228ENST00000487354 CXCR1P25024 350 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 CLDN17P56750 224 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 FXNQ16595 210 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 TUSC1Q2TAM9 212 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 SMU1Q2TAY7 513 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 CEACAM16Q2WEN9 425 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 COX20Q5RI15 118 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 SHQ1Q6PI26 577 aaKnown RBP13.16□□□□□ -0.3
MCF2L-228ENST00000487354 C1QL2Q7Z5L3 287 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 VRK2Q86Y07 508 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 WDFY1Q8IWB7 410 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 IFT20Q8IY31 132 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 MNS1Q8NEH6 495 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 RDH5Q92781 318 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 TESCQ96BS2 214 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 CCDC115Q96NT0 180 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 SLC6A7Q99884 636 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 SYT3Q9BQG1 590 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 ZNF747Q9BV97 191 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 TAPBPLQ9BX59 468 aa13.16□□□□□ -0.3
MCF2L-228ENST00000487354 TRAV20A0A0B4J274 112 aa13.15□□□□□ -0.3
MCF2L-228ENST00000487354 DEAF1O75398 565 aaPredicted RBP13.15□□□□□ -0.3
MCF2L-228ENST00000487354 FSHBP01225 129 aa13.15□□□□□ -0.3
MCF2L-228ENST00000487354 HLA-HP01893 362 aa13.15□□□□□ -0.3
MCF2L-228ENST00000487354 GSNP06396 782 aa13.15□□□□□ -0.3
MCF2L-228ENST00000487354 DBIP07108 87 aaKnown RBP13.15□□□□□ -0.3
MCF2L-228ENST00000487354 SERPINB5P36952 375 aa13.15□□□□□ -0.3
MCF2L-228ENST00000487354 CDKN2CP42773 168 aa13.15□□□□□ -0.3
MCF2L-228ENST00000487354 LIMS1P48059 325 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms