RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 RLIMQ9NVW2 624 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 FBXL2Q9UKC9 423 aa15.24■□□□□ 0.03
COL7A1-210ENST00000487017 TTLL8A6PVC2 850 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 SURF4O15260 269 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 PIP5K1CO60331 668 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 CHRNB1P11230 501 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ITGB8P26012 769 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 SMAD2Q15796 467 aaKnown RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 PLCXD3Q63HM9 321 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ABHD17CQ6PCB6 329 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 FAM57BQ71RH2 274 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 OR14A16Q8NHC5 309 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 BORCS7Q96B45 105 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 GIMAP5Q96F15 307 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 TEX51A0A1B0GUA7 166 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 HIDE1A8MVS5 230 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 LCMT2O60294 686 aaKnown RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ATP1B3P54709 279 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 OXA1LQ15070 435 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 STK11Q15831 433 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 MFSD12Q6NUT3 480 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 CREB3L2Q70SY1 520 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 PHYHIPQ92561 330 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 KRBOX1C9JBD0 128 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 MED6O75586 246 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 YPEL5P62699 121 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 EEF1A1P68104 462 aaKnown RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 HHIPQ96QV1 700 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 USB1Q9BQ65 265 aaKnown RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 SLC38A1Q9H2H9 487 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ACER3Q9NUN7 267 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 LUZP4Q9P127 313 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 PLPP1O14494 284 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 FADS1O60427 444 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 BCL6P41182 706 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 TM4SF4P48230 202 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 SEC61A1P61619 476 aaKnown RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF750Q32MQ0 723 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 C5orf46Q6UWT4 87 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 OR56B1Q8NGI3 324 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 SLC35B4Q969S0 331 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 RSPRY1Q96DX4 576 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 GABARAPL3Q9BY60 117 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 UBQLN3Q9H347 655 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 HCFC2Q9Y5Z7 792 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF705FA8MVS1 300 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 PRICKLE3O43900 615 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ABLIM3O94929 683 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 DBHP09172 617 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF705DP0CH99 300 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF705BP0CI00 300 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-210ENST00000487017 ERVK-16P61578 105 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 SLC14A1Q13336 389 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 TMEM52BQ4KMG9 183 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 GPR155Q7Z3F1 870 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 VN1R3Q9BXE9 311 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 C20orf85Q9H1P6 137 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 TP53TG5Q9Y2B4 290 aa15.23■□□□□ 0.03
COL7A1-210ENST00000487017 TMEM129A0AVI4 362 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 TGM6O95932 706 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 SNRNP70P08621 437 aaKnown RBP15.22■□□□□ 0.03
COL7A1-210ENST00000487017 ALKBH1Q13686 389 aaKnown RBP15.22■□□□□ 0.03
COL7A1-210ENST00000487017 SAXO2Q658L1 398 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF454Q8N9F8 522 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 NUDT22Q9BRQ3 303 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 CHST8Q9H2A9 424 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 TUBG2Q9NRH3 451 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 SLC25A37Q9NYZ2 338 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 PAPLNO95428 1278 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 MT-CO2P00403 227 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 SERPINA7P05543 415 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 ZMAT1Q5H9K5 638 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 MCOLN1Q9GZU1 580 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 BOLA1Q9Y3E2 137 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 ZFAND5O76080 213 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 TRAPPC2P0DI81 140 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 TRAPPC2BP0DI82 140 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 TNFRSF4P43489 277 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 OR1D4P47884 311 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 CCR6P51684 374 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 RAB31Q13636 194 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 HTR4Q13639 388 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 SYT14P1Q58G82 188 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 AFMIDQ63HM1 303 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 PHOSPHO2Q8TCD6 241 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 TOX2Q96NM4 488 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 PRR14Q9BWN1 585 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 C1orf198Q9H425 327 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 SMLR1H3BR10 107 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 FBXO46Q6PJ61 603 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-210ENST00000487017 OLIG3Q7RTU3 272 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 RSC1A1Q92681 617 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 SLAMF9Q96A28 289 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 ZNF578Q96N58 590 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-210ENST00000487017 FBXO8Q9NRD0 319 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 PLCXD1Q9NUJ7 323 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 STEAP1Q9UHE8 339 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 PTRH2Q9Y3E5 179 aaKnown RBP15.22■□□□□ 0.03
COL7A1-210ENST00000487017 MYO10Q9HD67 2058 aa15.22■□□□□ 0.03
COL7A1-210ENST00000487017 PDE4DIPQ5VU43 2346 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms