RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 CBLP22681 906 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 ROR2Q01974 943 aaKnown RBP18.79■□□□□ 0.6
USP40-215ENST00000484528 TMEM249Q2WGJ8 235 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 AGBL2Q5U5Z8 902 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 HMBOX1Q6NT76 420 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 NANOS1Q8WY41 292 aaKnown RBP18.79■□□□□ 0.6
USP40-215ENST00000484528 FAM168AQ92567 244 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 BCL2L2Q92843 193 aaPredicted RBP18.79■□□□□ 0.6
USP40-215ENST00000484528 KCNS3Q9BQ31 491 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 NELFAQ9H3P2 528 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 IKZF5Q9H5V7 419 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 SEC61A2Q9H9S3 476 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 VAPAQ9P0L0 249 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 PMF1-BGLAPU3KQ54 211 aa18.79■□□□□ 0.6
USP40-215ENST00000484528 A8MV72 311 aaPredicted RBP18.78■□□□□ 0.6
USP40-215ENST00000484528 M0R082 166 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 ZNF43P17038 809 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 PRKAR1BP31321 381 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 MRPL19P49406 292 aaKnown RBP18.78■□□□□ 0.6
USP40-215ENST00000484528 AQP5P55064 265 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 DSCR9P59020 149 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 CDK6Q00534 326 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 IL1RL1Q01638 556 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 ZNF417Q8TAU3 575 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 RNF217Q8TC41 542 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 TAAR8Q969N4 342 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 SLC35B4Q969S0 331 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 ZNF587Q96SQ5 575 aaPredicted RBP18.78■□□□□ 0.6
USP40-215ENST00000484528 OBP2BQ9NPH6 170 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 B3GAT1Q9P2W7 334 aa18.78■□□□□ 0.6
USP40-215ENST00000484528 IGKV1D-42A0A075B6H8 117 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 OR6C65A6NJZ3 312 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 TGDSO95455 350 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 BMP4P12644 408 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 SLC25A16P16260 332 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 AQP1P29972 269 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 GRPRP30550 384 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 EFNA4P52798 201 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 MST1LQ2TV78 715 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 AGKQ53H12 422 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 ALG10BQ5I7T1 473 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 C6orf52Q5T4I8 152 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 REEP3Q6NUK4 255 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 VHLLQ6RSH7 139 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 C6orf89Q6UWU4 347 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 CXXC5Q7LFL8 322 aaKnown RBP18.77■□□□□ 0.6
USP40-215ENST00000484528 C10orf105Q8TEF2 133 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 BOD1Q96IK1 185 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 OXGR1Q96P68 337 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 TNFRSF13CQ96RJ3 184 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 CCDC28BQ9BUN5 200 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 LINC00470Q9BZP3 86 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 SLC52A3Q9NQ40 469 aa18.77■□□□□ 0.6
USP40-215ENST00000484528 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.77■□□□□ 0.6
USP40-215ENST00000484528 AIM2O14862 343 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 SLC43A1O75387 559 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 SEC14L2O76054 403 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 ZNF432O94892 652 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 CRYAAP02489 173 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 CECR9P0C854 216 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 ARF1P84077 181 aaKnown RBP18.76■□□□□ 0.59
USP40-215ENST00000484528 C1DQ13901 141 aaKnown RBP18.76■□□□□ 0.59
USP40-215ENST00000484528 SCARB2Q14108 478 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 SWI5Q1ZZU3 235 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 C1QTNF12Q5T7M4 302 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 FAM69AQ5T7M9 428 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 ANKRD16Q6P6B7 361 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 DHRS4L2Q6PKH6 230 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 MYPOPQ86VE0 399 aaPredicted RBP18.76■□□□□ 0.59
USP40-215ENST00000484528 KRT73Q86Y46 540 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 HIPK1Q86Z02 1210 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 SLC38A4Q969I6 547 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 SORCS2Q96PQ0 1159 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 CA10Q9NS85 328 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 RCE1Q9Y256 329 aa18.76■□□□□ 0.59
USP40-215ENST00000484528 TRBV5-3A0A0A0MS03 114 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 ARPC4-TTLL3A0A0A6YYG9 625 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 CELA3BP08861 270 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 CALCRP30988 508 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 RGS8P57771 180 aaPredicted RBP18.75■□□□□ 0.59
USP40-215ENST00000484528 NCALDP61601 193 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 SNRPD2P62316 118 aaKnown RBP18.75■□□□□ 0.59
USP40-215ENST00000484528 NAAAQ02083 359 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 LOXL1Q08397 574 aaPredicted RBP18.75■□□□□ 0.59
USP40-215ENST00000484528 GPR137CQ8N3F9 429 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 LSMEM1Q8N8F7 131 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 ANKS4BQ8N8V4 417 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 ZNF837Q96EG3 531 aaPredicted RBP18.75■□□□□ 0.59
USP40-215ENST00000484528 WFDC6Q9BQY6 131 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 KATNB1Q9BVA0 655 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 SPATA5L1Q9BVQ7 753 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 C12orf10Q9HB07 376 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 GPR35Q9HC97 309 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 KLHL14Q9P2G3 628 aa18.75■□□□□ 0.59
USP40-215ENST00000484528 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.74■□□□□ 0.59
USP40-215ENST00000484528 TRAV36DV7A0A075B6V5 113 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 TRAF3IP2O43734 574 aaPredicted RBP18.74■□□□□ 0.59
USP40-215ENST00000484528 OR2T1O43869 369 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 FZD7O75084 574 aa18.74■□□□□ 0.59
USP40-215ENST00000484528 HPRP00739 348 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms